Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4870

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1180583 to 1182754 13237 mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1183221 to 1185751 13238 mRNA_4871: 13239 - K03777 dld D-lactate dehydrogenase, at 1185921 to 1188048 13239

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,182,340 - 13237 mRNA_4869 0.81 -1.1
1,182,722 - -0.0
1,183,868 + 13238 mRNA_4870 0.26 1.0
1,183,925 - 13238 mRNA_4870 0.28 -1.6
1,184,331 - 13238 mRNA_4870 0.44 -0.1
1,184,342 + 13238 mRNA_4870 0.44 -0.6
1,184,349 - 13238 mRNA_4870 0.45 -0.2
1,184,362 + 13238 mRNA_4870 0.45 -1.1
1,185,075 + 13238 mRNA_4870 0.73 2.0
1,185,332 + 13238 mRNA_4870 0.83 -0.3
1,185,336 - 13238 mRNA_4870 0.84 0.3
1,185,339 - 13238 mRNA_4870 0.84 -0.6
1,185,343 - 13238 mRNA_4870 0.84 -0.5
1,185,353 - 13238 mRNA_4870 0.84 0.5
1,185,377 - 13238 mRNA_4870 0.85 -0.5
1,185,488 + 13238 mRNA_4870 0.90 -1.1
1,185,494 - 13238 mRNA_4870 0.90 -0.2
1,185,497 + 13238 mRNA_4870 0.90 0.2
1,185,631 - -0.2
1,185,638 - 0.3
1,185,644 + -0.7
1,185,645 + -1.2
1,185,649 + -0.8
1,185,669 + 0.2
1,185,806 - -0.2
1,185,816 - -0.1
1,185,818 - 1.1
1,185,823 + 1.4
1,185,827 - -0.0
1,185,828 + -0.4
1,185,830 + 0.1
1,185,832 + -1.3
1,185,842 + -0.0
1,185,844 - -0.0
1,185,849 + 0.1
1,185,850 + 1.2
1,185,851 + 2.2
1,185,859 - -0.8
1,185,859 - -0.8
1,185,860 + -0.0
1,185,864 + -0.4
1,185,866 - 0.2
1,185,866 - 0.5
1,185,866 + 0.1
1,185,881 + -0.6
1,185,882 + -0.1
1,185,883 + 0.6
1,185,888 - 1.0
1,185,896 + -0.2
1,185,898 - -0.3
1,185,899 + 0.2
1,185,903 + -2.9
1,185,905 + 0.4
1,185,910 + 0.9
1,185,919 + 0.6
1,185,927 - 0.4
1,186,034 + 0.9
1,186,035 + 2.0
1,186,045 + 0.8
1,186,260 - 13239 mRNA_4871 0.16 -0.5
1,186,300 + 13239 mRNA_4871 0.18 -0.3
1,186,330 + 13239 mRNA_4871 0.19 1.1
1,186,614 + 13239 mRNA_4871 0.33 -0.6
1,186,622 + 13239 mRNA_4871 0.33 -0.1