Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4835

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4834: 13202 - K02996 RP-S9, MRPS9, rpsI small subunit ribosomal protein S9, at 1112010 to 1113278 13202 mRNA_4835: 13203 - KOG0490 Transcription factor, contains HOX domain, at 1114213 to 1116199 13203 mRNA_4836: 13204 - BLAST NEK protein kinase [Microbotryum lychnidis-dioicae p1..., at 1116510 to 1117726 13204

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,113,313 - 1.1
1,113,313 - 0.7
1,113,326 - 0.9
1,113,326 + 1.4
1,113,331 + 1.8
1,113,338 - -0.1
1,113,349 + 0.6
1,113,358 - -0.5
1,113,359 + 1.1
1,113,360 + -0.4
1,113,360 + -0.6
1,113,360 + 0.3
1,113,363 + -0.2
1,113,364 + 0.2
1,113,365 + 0.1
1,113,466 - -1.1
1,113,467 + 0.6
1,113,482 + 0.3
1,113,483 - 0.3
1,113,486 - -0.3
1,113,490 - 1.4
1,113,500 + 0.6
1,113,501 + -0.1
1,113,502 - 0.2
1,113,513 + -0.9
1,113,519 + 1.6
1,113,523 + 0.2
1,113,524 + 0.3
1,113,534 - -1.4
1,113,563 + -0.2
1,113,639 - 0.4
1,113,647 - 0.0
1,113,650 + 0.2
1,113,652 + -0.0
1,113,653 + 1.2
1,113,673 - 0.4
1,113,680 + 0.1
1,113,684 - 1.0
1,113,684 + 0.2
1,113,685 + -0.7
1,113,685 + -0.4
1,113,687 + 0.9
1,113,694 - -0.2
1,113,697 + 1.5
1,113,702 - -0.2
1,113,830 - 0.1
1,113,838 + -0.3
1,113,844 - -1.9
1,113,848 + -0.5
1,113,854 + -0.0
1,113,861 + -0.0
1,113,874 + -1.0
1,113,874 - 1.0
1,113,890 + 0.7
1,113,891 + -1.1
1,114,011 + 0.7
1,114,019 - 1.6
1,114,021 + 0.2
1,114,036 - 0.3
1,114,054 + 0.4
1,114,144 - 0.1
1,114,182 + 0.1
1,114,282 - 0.1
1,114,662 - 13203 mRNA_4835 0.23 0.2
1,114,889 - 13203 mRNA_4835 0.34 -0.2
1,114,890 - 13203 mRNA_4835 0.34 0.8
1,114,940 - 13203 mRNA_4835 0.37 0.1
1,114,949 + 13203 mRNA_4835 0.37 0.3
1,115,564 - 13203 mRNA_4835 0.68 1.5
1,115,663 + 13203 mRNA_4835 0.73 -0.5
1,115,922 - 13203 mRNA_4835 0.86 -0.2
1,116,036 - -0.4
1,116,679 + 13204 mRNA_4836 0.14 -1.0
1,116,922 + 13204 mRNA_4836 0.34 1.3
1,117,150 + 13204 mRNA_4836 0.53 0.1