Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4427

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156367 to 159071 12794 mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160068 to 161346 12795 mRNA_4428: 12796 - Hypothetical Protein, at 161727 to 164031 12796

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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159,074 - -0.3
159,146 - -0.1
159,230 + 0.4
159,596 + 1.1
159,873 + -0.3
159,873 - 0.2
160,010 + -0.2
160,013 - -0.4
160,025 + -0.3
160,104 - -0.2
160,155 + -1.1
160,295 - 12795 mRNA_4427 0.18 1.2
160,442 + 12795 mRNA_4427 0.29 0.3
160,858 - 12795 mRNA_4427 0.62 -2.1
160,875 - 12795 mRNA_4427 0.63 -0.2
161,025 + 12795 mRNA_4427 0.75 0.2
161,139 - 12795 mRNA_4427 0.84 -0.6
161,146 + 12795 mRNA_4427 0.84 -1.3
161,177 - 12795 mRNA_4427 0.87 -2.0
161,348 - 1.2
161,395 - -1.1
161,396 + -0.4
161,753 - 0.8