Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4414

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126520 to 129077 12781 mRNA_4414: 12782 - BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [..., at 129803 to 130566 12782 mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131419 to 134157 12783

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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128,873 - 1.2
128,874 - 0.6
129,023 + 1.6
129,214 + 0.6
129,248 + -1.2
129,251 - -0.7
129,425 - -0.1
129,474 + -0.4
129,484 - 1.3
129,484 - 0.9
129,486 - -1.0
129,495 - -0.4
129,502 - 0.2
129,503 + 0.2
129,514 + -0.1
129,521 + 0.5
129,597 + -0.6
129,614 - 1.6
129,624 + -0.4
129,745 + -2.3
129,751 - 0.2
129,771 - -0.2
129,824 - -0.8
129,889 + 12782 mRNA_4414 0.11 0.1
130,057 + 12782 mRNA_4414 0.33 -0.3
130,161 + 12782 mRNA_4414 0.47 0.5
130,176 + 12782 mRNA_4414 0.49 -1.7
130,196 - 12782 mRNA_4414 0.51 0.0
130,324 + 12782 mRNA_4414 0.68 -0.4
130,452 + 12782 mRNA_4414 0.85 -1.2
130,541 + 1.1
130,622 + -0.7
130,786 - -1.0
131,085 - 0.3
131,087 - -0.8
131,213 - 2.8
131,256 - 2.7
131,478 - 0.5
131,478 + -1.1
131,546 + 0.3