Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4373

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38452 to 41065 12740 mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41270 to 42990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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40,418 + 12740 mRNA_4372 0.75 2.2
40,539 - 12740 mRNA_4372 0.80 -0.1
40,543 - 12740 mRNA_4372 0.80 1.3
40,856 + -0.0
40,979 + -0.5
41,037 + 0.8
41,124 - -0.5
41,125 - -0.2
41,127 + 0.8
41,129 + 0.5
41,136 - -0.5
41,137 + 1.0
41,137 + 0.6
41,138 - -0.4
41,139 - 0.8
41,139 + 1.5
41,141 - -0.5
41,152 - 0.9
41,154 + -1.6
41,156 - 0.3
41,156 - -0.1
41,157 - -0.1
41,159 + 0.1
41,163 + 0.4
41,163 + -0.7
41,163 - 0.3
41,166 - -0.6
41,166 + 0.7
41,171 + 0.6
41,200 - 0.0
41,222 + 2.1
41,233 - 3.0
41,234 - 2.2
41,254 + 0.0
41,256 - -0.1
41,264 + -0.5
41,269 + -0.8
41,355 + -0.3
41,382 + -0.2
41,382 + -0.5
41,397 + 0.4
41,430 - 1.7
41,490 + 12741 mRNA_4373 0.13 0.1
41,512 - 12741 mRNA_4373 0.14 0.2
41,516 - 12741 mRNA_4373 0.14 0.2
41,783 + 12741 mRNA_4373 0.30 0.2
41,851 - 12741 mRNA_4373 0.34 1.7
41,864 + 12741 mRNA_4373 0.35 0.8
41,870 + 12741 mRNA_4373 0.35 1.0
41,937 + 12741 mRNA_4373 0.39 -1.1
42,116 + 12741 mRNA_4373 0.49 -1.4
42,232 + 12741 mRNA_4373 0.56 0.2
42,540 + 12741 mRNA_4373 0.74 0.1
42,735 + 12741 mRNA_4373 0.85 0.9
42,790 + 12741 mRNA_4373 0.88 0.4
42,864 + 0.7
42,973 + 1.0
43,033 + 0.1
43,033 + 0.7
43,160 + -3.0
43,162 - -1.9
43,311 + -0.0
43,322 - -1.0
43,373 - -0.4
43,382 + -0.1
43,425 + 12742 mRNA_4374 0.10 -0.0
43,437 + 12742 mRNA_4374 0.11 -0.2
43,541 - 12742 mRNA_4374 0.14 -1.5
43,542 - 12742 mRNA_4374 0.14 0.2
43,720 + 12742 mRNA_4374 0.20 1.1
43,871 + 12742 mRNA_4374 0.25 0.4
43,896 - 12742 mRNA_4374 0.26 -1.2
43,905 - 12742 mRNA_4374 0.27 -0.3
43,943 - 12742 mRNA_4374 0.28 -0.3