Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4347

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4346: 12714 - K18754 LIN28 protein lin-28, at 1962834 to 1965398 12714 mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1965895 to 1967093 12715 mRNA_4348: 12716 - KOG2265 Nuclear distribution protein NUDC, at 1967536 to 1968862 12716

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,965,622 - -0.8
1,965,647 - 0.9
1,965,658 + -1.9
1,965,941 - 3.2
1,965,949 + -0.5
1,966,071 + 12715 mRNA_4347 0.15 1.7
1,966,144 - 12715 mRNA_4347 0.21 0.2
1,966,948 - 12715 mRNA_4347 0.88 -3.0
1,966,961 - 12715 mRNA_4347 0.89 0.7
1,967,102 - 1.7
1,967,103 + -0.5
1,967,234 + -0.9
1,967,246 - 1.4
1,967,254 - -0.0
1,967,260 - 0.9
1,967,260 + -1.0
1,967,267 + -0.3
1,967,273 + -0.1
1,967,273 + 1.4
1,967,274 + -0.8
1,967,278 + 0.7
1,967,328 - 1.2
1,967,352 + 0.5
1,967,361 + 0.9
1,967,367 - 0.5
1,967,368 + -0.0
1,967,372 + 1.2
1,967,375 - -0.2
1,967,376 + -0.2
1,967,380 + 0.2
1,967,384 - 0.3
1,967,386 - 1.1
1,967,387 + -0.5
1,967,392 + -0.0
1,967,393 + 0.2
1,967,399 + -0.2
1,967,402 - -0.4
1,967,406 + 0.9
1,967,408 - -0.2