Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4218

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4217: 12585 - K14830 MAK11, PAK1IP1 protein MAK11, at 1636236 to 1637979 12585 mRNA_4218: 12586 - K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3, at 1638497 to 1642867 12586 mRNA_4219: 12587 - HMMPfam-Protein phosphatase inhibitor 2 (IPP-2)-PF04979, at 1642992 to 1644310 12587

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,638,017 - 0.2
1,638,026 - 1.8
1,638,028 + 0.5
1,638,036 + 0.1
1,638,049 + 0.2
1,638,456 - -0.5
1,638,512 + 0.5
1,638,529 + 1.3
1,638,591 - 0.6
1,638,727 - 0.9
1,638,766 - 0.1
1,638,874 + 0.7
1,638,874 - -0.5
1,639,020 - 12586 mRNA_4218 0.12 -0.5
1,639,038 - 12586 mRNA_4218 0.12 0.2
1,639,455 - 12586 mRNA_4218 0.22 -0.4
1,639,777 - 12586 mRNA_4218 0.29 -0.3
1,639,787 + 12586 mRNA_4218 0.30 -0.3
1,639,887 - 12586 mRNA_4218 0.32 -0.6
1,639,993 + 12586 mRNA_4218 0.34 -0.2
1,640,227 + 12586 mRNA_4218 0.40 1.6
1,640,632 - 12586 mRNA_4218 0.49 0.8
1,640,636 - 12586 mRNA_4218 0.49 2.0
1,640,825 + 12586 mRNA_4218 0.53 -0.0
1,641,100 + 12586 mRNA_4218 0.60 0.9
1,641,366 + 12586 mRNA_4218 0.66 0.8
1,641,493 - 12586 mRNA_4218 0.69 1.3
1,641,545 - 12586 mRNA_4218 0.70 -0.1
1,641,650 + 12586 mRNA_4218 0.72 0.4
1,641,732 + 12586 mRNA_4218 0.74 -0.8
1,642,055 + 12586 mRNA_4218 0.81 1.2
1,642,274 + 12586 mRNA_4218 0.86 -0.7
1,642,378 - 12586 mRNA_4218 0.89 1.8
1,642,475 - 1.0
1,642,511 + 0.4
1,642,636 - 0.4
1,642,652 + 0.8
1,642,798 + 0.5
1,642,798 - 0.0
1,642,798 - 1.3
1,642,799 - -0.7
1,642,802 + 0.1
1,642,807 - 0.3
1,642,812 + -0.9
1,642,918 - 0.5
1,642,925 + 0.1
1,642,933 - 0.1
1,642,935 + -2.0
1,642,937 + -0.7
1,642,938 + 0.1
1,642,941 + 0.7
1,642,945 - -0.6
1,642,953 + 0.5
1,643,066 + -0.2
1,643,095 + 2.2
1,643,522 + 12587 mRNA_4219 0.40 1.6
1,643,536 - 12587 mRNA_4219 0.41 -1.4
1,643,538 - 12587 mRNA_4219 0.41 1.6
1,643,569 - 12587 mRNA_4219 0.44 -0.0
1,643,662 - 12587 mRNA_4219 0.51 -0.8
1,643,822 - 12587 mRNA_4219 0.63 0.0