Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4215

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4214: 12582 - Hypothetical Protein, at 1627604 to 1628234 12582 mRNA_4215: 12583 - HMMPfam-RhoGAP domain-PF00620,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-Fes/CIP4 homology domain-SM00055,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF48350, at 1628939 to 1632484 12583 mRNA_4216: 12584 - K13123 GPATCH1 G patch domain-containing protein 1, at 1632633 to 1635917 12584

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,628,166 + 12582 mRNA_4214 0.89 -0.1
1,628,450 - -2.6
1,628,592 - 0.3
1,628,705 - -0.8
1,628,870 - 0.4
1,628,898 + -0.0
1,628,898 + 0.7
1,628,899 - -0.4
1,629,051 + 0.3
1,629,306 + 12583 mRNA_4215 0.10 -0.3
1,629,356 - 12583 mRNA_4215 0.12 -0.6
1,630,159 - 12583 mRNA_4215 0.34 0.4
1,630,419 + 12583 mRNA_4215 0.42 0.5
1,630,530 + 12583 mRNA_4215 0.45 0.4
1,630,543 - 12583 mRNA_4215 0.45 0.2
1,631,018 - 12583 mRNA_4215 0.59 1.5
1,631,079 + 12583 mRNA_4215 0.60 -1.6
1,631,448 - 12583 mRNA_4215 0.71 0.9
1,631,662 - 12583 mRNA_4215 0.77 -0.2
1,631,713 - 12583 mRNA_4215 0.78 -1.1
1,631,718 + 12583 mRNA_4215 0.78 0.0
1,632,125 - 12583 mRNA_4215 0.90 -2.3
1,632,135 + 0.2
1,632,275 - 0.1
1,632,288 + -0.5
1,632,457 - -0.5
1,632,521 + 0.2
1,632,526 - -0.3
1,632,560 - -1.6
1,632,634 - -1.4
1,632,640 + -0.4
1,632,653 + 0.2
1,632,734 + 0.8
1,632,762 + 0.0
1,633,021 + 12584 mRNA_4216 0.12 -1.1
1,633,022 + 12584 mRNA_4216 0.12 0.2
1,633,104 - 12584 mRNA_4216 0.14 1.8
1,633,130 + 12584 mRNA_4216 0.15 1.8
1,633,197 + 12584 mRNA_4216 0.17 0.2
1,633,287 - 12584 mRNA_4216 0.20 0.2