Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4074

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4073: 12441 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1289384 to 1292413 12441 mRNA_4074: 12442 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1292721 to 1296857 12442 mRNA_4075: 12443 - Hypothetical Protein, at 1297147 to 1298186 12443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,292,026 + 12441 mRNA_4073 0.87 1.3
1,292,174 - 1.2
1,292,178 - -0.2
1,292,289 + -1.4
1,292,346 + 1.1
1,292,587 - 1.1
1,292,605 - 0.7
1,292,606 - 1.0
1,292,610 - 1.7
1,292,610 + 1.0
1,292,614 + -1.0
1,292,621 + -0.4
1,292,734 - -0.2
1,292,776 + -0.7
1,292,878 + 0.2
1,292,879 - -0.5
1,293,024 - 1.6
1,293,027 + 0.3
1,293,487 - 12442 mRNA_4074 0.19 -0.3
1,293,638 - 12442 mRNA_4074 0.22 -0.2
1,293,730 - 12442 mRNA_4074 0.24 0.4
1,294,075 - 12442 mRNA_4074 0.33 -1.7
1,294,157 + 12442 mRNA_4074 0.35 1.0
1,294,160 + 12442 mRNA_4074 0.35 1.6
1,294,223 + 12442 mRNA_4074 0.36 -0.4
1,294,275 - 12442 mRNA_4074 0.38 -1.6
1,294,369 - 12442 mRNA_4074 0.40 -0.9
1,294,471 - 12442 mRNA_4074 0.42 -0.4
1,294,636 - 12442 mRNA_4074 0.46 1.3
1,295,482 + 12442 mRNA_4074 0.67 -1.3
1,295,496 + 12442 mRNA_4074 0.67 -0.5
1,295,496 + 12442 mRNA_4074 0.67 -1.3
1,295,848 + 12442 mRNA_4074 0.76 -0.5
1,296,170 - 12442 mRNA_4074 0.83 1.4
1,296,459 + -0.2
1,296,673 - 2.4
1,296,930 - 0.1
1,297,619 - 12443 mRNA_4075 0.45 -0.2
1,297,632 - 12443 mRNA_4075 0.47 -0.5