Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4061

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4060: 12428 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 1257194 to 1260711 12428 mRNA_4061: 12429 - SUPERFAMILY--SSF52540, at 1260882 to 1262989 12429 mRNA_4062: 12430 - HMMPfam-Protein of unknown function (DUF1115)-PF06544, at 1263570 to 1264744 12430

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,260,477 - 0.7
1,260,643 + 2.2
1,260,801 - -0.1
1,260,805 - 1.3
1,260,937 + 0.6
1,260,982 + -0.8
1,261,091 + -1.3
1,261,104 - 12429 mRNA_4061 0.11 0.3
1,261,245 - 12429 mRNA_4061 0.17 0.8
1,261,416 + 12429 mRNA_4061 0.25 -0.4
1,261,504 + 12429 mRNA_4061 0.30 2.2
1,261,571 + 12429 mRNA_4061 0.33 -0.2
1,261,633 - 12429 mRNA_4061 0.36 2.3
1,261,675 + 12429 mRNA_4061 0.38 0.0
1,261,675 + 12429 mRNA_4061 0.38 1.3
1,261,955 - 12429 mRNA_4061 0.51 0.2
1,261,967 + 12429 mRNA_4061 0.51 0.1
1,262,116 - 12429 mRNA_4061 0.59 -0.0
1,262,389 + 12429 mRNA_4061 0.71 1.2
1,262,552 + 12429 mRNA_4061 0.79 -0.0
1,262,698 - 12429 mRNA_4061 0.86 1.3
1,262,727 - 12429 mRNA_4061 0.88 -0.7
1,263,228 - 0.7
1,263,249 - 1.0
1,263,253 - -0.4
1,263,255 + 0.1
1,263,259 + 0.9
1,263,262 - -0.6
1,263,267 + -0.1
1,263,267 + -0.2
1,263,275 + -0.9
1,263,278 + -1.2
1,263,286 - 0.8
1,263,288 + -0.3
1,263,297 + 0.6
1,263,319 - 1.4
1,263,367 - 0.1
1,263,433 - 0.4
1,263,437 - 2.1
1,263,623 - 0.4
1,263,638 - -0.7
1,263,763 + 12430 mRNA_4062 0.16 1.1
1,263,792 + 12430 mRNA_4062 0.19 0.3
1,263,805 + 12430 mRNA_4062 0.20 0.3
1,263,912 - 12430 mRNA_4062 0.29 0.2
1,263,938 + 12430 mRNA_4062 0.31 -0.5
1,263,938 + 12430 mRNA_4062 0.31 -0.1