Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3852

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742055 to 744016 12219 mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744290 to 745525 12220 mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746204 to 748742 12221

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
743,389 + 12219 mRNA_3851 0.68 -0.7
743,792 - 12219 mRNA_3851 0.89 -2.2
743,871 + -0.2
743,927 - 0.4
743,928 + -0.5
743,940 - 0.9
743,956 - -0.1
743,961 + -0.3
744,053 + -0.0
744,075 - 0.2
744,086 + -0.7
744,101 - 0.1
744,116 - -0.0
744,119 + 0.4
744,126 + 0.4
744,127 - 2.1
744,127 + -0.8
744,151 - 0.2
744,254 - 0.1
744,269 + 1.6
744,396 + 1.4
744,661 + 12220 mRNA_3852 0.30 0.3
744,967 - 12220 mRNA_3852 0.55 -0.1
744,977 - 12220 mRNA_3852 0.56 0.1
744,978 - 12220 mRNA_3852 0.56 -0.6
745,104 + 12220 mRNA_3852 0.66 0.3
745,114 - 12220 mRNA_3852 0.67 -1.1
745,124 - 12220 mRNA_3852 0.67 0.4
745,132 - 12220 mRNA_3852 0.68 -0.0
745,279 - 12220 mRNA_3852 0.80 0.6
745,296 + 12220 mRNA_3852 0.81 -0.9
745,420 - -0.2
745,423 - -0.0
745,538 + -0.1
745,664 + 0.7
745,896 + 1.3
746,470 + 12221 mRNA_3853 0.10 0.4