Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3841

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714373 to 715825 12208 mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716088 to 718591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718852 to 719357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719514 to 723213 12211

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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715,501 + 12208 mRNA_3840 0.78 0.9
715,760 + -1.9
715,913 + -1.0
715,918 + -0.7
716,620 - 12209 mRNA_3841 0.21 -0.1
716,780 + 12209 mRNA_3841 0.28 0.1
717,337 - 12209 mRNA_3841 0.50 0.8
717,787 + 12209 mRNA_3841 0.68 -0.9
717,792 - 12209 mRNA_3841 0.68 1.0
718,086 - 12209 mRNA_3841 0.80 -1.1
718,092 - 12209 mRNA_3841 0.80 -1.1
718,527 - -1.6
718,789 - 1.1
718,822 + 0.4
718,847 + -1.8
718,929 + 12210 mRNA_3842 0.15 1.6
718,962 - 12210 mRNA_3842 0.22 -0.1
718,970 + 12210 mRNA_3842 0.23 -0.1
718,998 - 12210 mRNA_3842 0.29 -1.3
719,110 - 12210 mRNA_3842 0.51 -0.2
719,119 + 12210 mRNA_3842 0.53 -2.2
719,136 + 12210 mRNA_3842 0.56 -0.9
719,272 - 12210 mRNA_3842 0.83 -0.4
719,318 + -0.2
719,396 - 0.4
719,569 - -0.2
719,590 - -0.6