Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3709

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3708: 12076 - Hypothetical Protein, at 405406 to 406282 12076 mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406586 to 407790 12077 mRNA_3710: 12078 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408038 to 408694 12078 mRNA_3711: 12079 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408733 to 409937 12079

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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405,721 + 12076 mRNA_3708 0.36 0.7
405,768 + 12076 mRNA_3708 0.41 0.4
405,898 + 12076 mRNA_3708 0.56 0.3
405,907 - 12076 mRNA_3708 0.57 -0.7
406,186 - 12076 mRNA_3708 0.89 0.5
406,199 + 0.5
406,214 + 0.5
406,235 - -0.9
406,257 + 0.2
406,344 + -0.3
406,345 + -1.2
406,349 + -0.6
406,355 - -1.0
406,357 - 0.2
406,359 - -0.2
406,361 - 0.5
406,364 - 0.3
406,371 + 1.6
406,383 - -0.6
406,383 - -0.7
406,386 + -0.2
406,389 + 0.5
406,393 - 0.1
406,400 - -0.9
406,401 + -0.3
406,419 + 1.1
406,433 - 0.7
406,433 + 0.0
406,452 - 1.7
406,453 + -0.0
406,458 - 1.2
406,465 - 0.8
406,471 + -1.1
406,487 - -1.2
406,490 + -0.7
406,490 - 0.3
406,494 + -1.6
406,494 + 1.4
406,494 + -0.4
406,495 + -0.7
406,498 + 0.5
406,500 + -0.2
406,503 - -0.3
406,507 - 0.6
406,508 - 0.4
406,509 + -0.5
406,509 + -0.1
406,520 + -0.6
406,520 - -0.4
406,521 - -0.9
406,647 - -0.5
406,688 + 0.0
406,796 + 12077 mRNA_3709 0.17 -1.0
406,803 + 12077 mRNA_3709 0.18 -0.7
406,921 + 12077 mRNA_3709 0.28 -0.1
406,951 + 12077 mRNA_3709 0.30 0.6
407,087 - 12077 mRNA_3709 0.42 -0.2
407,251 + 12077 mRNA_3709 0.55 -0.9
407,486 - 12077 mRNA_3709 0.75 0.8
407,927 - 1.0
407,937 + 0.1
408,220 + 12078 mRNA_3710 0.28 2.1