Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3654

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269358 to 271210 12022 mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271428 to 272912 12023

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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268,770 + 0.1
268,811 - -0.9
268,817 - -0.0
268,818 - 0.6
268,821 - -0.5
268,912 - -0.5
268,984 + 0.4
268,989 + 0.8
269,009 + 0.7
269,032 - -0.8
269,089 - 0.4
269,138 - 0.3
269,151 - 1.0
269,174 + 2.3
269,189 - 2.6
269,228 - -0.6
269,232 + 0.0
269,256 - -0.2
269,312 + 0.1
269,330 - -0.6
269,339 - 1.2
269,343 + 0.4
269,353 + 0.4
269,354 - -0.1
269,355 + 0.7
269,357 + 0.6
269,358 + -0.2
269,358 + -0.0
269,375 + 1.0
269,377 + 0.3
269,397 + 0.9
269,397 - -0.5
269,464 - -0.7
269,477 - 0.6
269,479 - 0.3
269,479 - 0.1
269,481 - -0.3
269,482 - 0.7
269,502 + 0.2
269,518 - -1.2
269,641 + 12022 mRNA_3654 0.15 -0.5
269,650 - 12022 mRNA_3654 0.16 0.6
269,752 - 12022 mRNA_3654 0.21 -0.3
269,793 - 12022 mRNA_3654 0.23 1.7
269,899 - 12022 mRNA_3654 0.29 -0.3
269,900 - 12022 mRNA_3654 0.29 -0.4
269,921 - 12022 mRNA_3654 0.30 -0.2
269,930 - 12022 mRNA_3654 0.31 -0.7
269,934 - 12022 mRNA_3654 0.31 0.1
269,935 + 12022 mRNA_3654 0.31 2.3
269,935 + 12022 mRNA_3654 0.31 0.6
269,941 - 12022 mRNA_3654 0.31 -0.0
269,950 - 12022 mRNA_3654 0.32 0.1
269,974 - 12022 mRNA_3654 0.33 1.3
269,975 - 12022 mRNA_3654 0.33 0.2
269,976 + 12022 mRNA_3654 0.33 0.7
269,976 + 12022 mRNA_3654 0.33 1.8
269,978 - 12022 mRNA_3654 0.33 -2.1
269,990 - 12022 mRNA_3654 0.34 0.1
270,017 + 12022 mRNA_3654 0.36 0.5
270,019 + 12022 mRNA_3654 0.36 0.1
270,027 - 12022 mRNA_3654 0.36 0.3
270,028 + 12022 mRNA_3654 0.36 1.0
270,053 + 12022 mRNA_3654 0.38 0.5
270,053 + 12022 mRNA_3654 0.38 -0.1
270,054 - 12022 mRNA_3654 0.38 -1.3
270,062 + 12022 mRNA_3654 0.38 0.0
270,090 + 12022 mRNA_3654 0.40 0.2
270,192 - 12022 mRNA_3654 0.45 0.6
270,278 - 12022 mRNA_3654 0.50 2.5
270,314 + 12022 mRNA_3654 0.52 0.5
270,350 - 12022 mRNA_3654 0.54 -0.2
270,407 - 12022 mRNA_3654 0.57 -1.5
270,444 - 12022 mRNA_3654 0.59 -0.0
270,485 - 12022 mRNA_3654 0.61 0.3
270,486 + 12022 mRNA_3654 0.61 -1.0
270,492 + 12022 mRNA_3654 0.61 2.1
270,497 - 12022 mRNA_3654 0.61 -0.0
270,523 - 12022 mRNA_3654 0.63 -0.5
270,626 - 12022 mRNA_3654 0.68 0.5
270,646 + 12022 mRNA_3654 0.70 0.5
270,650 + 12022 mRNA_3654 0.70 0.9
270,655 + 12022 mRNA_3654 0.70 -1.1
270,811 + 12022 mRNA_3654 0.78 0.3
270,911 - 12022 mRNA_3654 0.84 0.0
270,934 - 12022 mRNA_3654 0.85 0.4
271,076 - 1.6
271,104 - 1.9
271,116 + 0.4
271,177 - -0.3
271,177 - 0.5
271,248 - 1.4
271,249 + 1.5
271,252 - -0.5
271,254 + -0.8
271,270 + -0.7
271,379 - -0.7
271,405 - -1.0
271,428 + 0.5
271,459 - 0.9
271,552 + -0.6
271,711 + 12023 mRNA_3655 0.19 0.2
271,836 - 12023 mRNA_3655 0.27 0.5
271,837 + 12023 mRNA_3655 0.28 -0.1
272,009 - 12023 mRNA_3655 0.39 -0.5