Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3639

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225683 to 228983 12007 mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229768 to 230624 12008

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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224,738 - -0.3
224,900 + 0.2
224,936 + 0.4
225,054 + 0.1
225,184 + -0.3
225,199 + 0.7
225,199 + -2.5
225,341 - -0.9
225,353 - 0.7
225,353 - -0.3
225,358 - 0.1
225,468 - -2.7
225,509 + 0.1
225,514 + -0.1
225,628 + 1.2
225,628 - -1.1
225,679 + 1.5
225,795 + 0.7
228,217 - 12007 mRNA_3639 0.77 1.7
228,996 + -0.7
229,004 + -0.0
229,012 + -0.3
229,121 - 0.0
229,139 - -0.1
229,140 + -0.1
229,281 - 1.4
229,282 + -0.2
229,289 - 0.3
229,291 + 0.3
229,292 + -0.1
229,298 - -1.5
229,299 + -0.2
229,302 + 0.1
229,314 + -0.7
229,317 + -0.1
229,320 + -0.1
229,326 - -0.5
229,326 - 0.2
229,327 + -0.7
229,596 + 1.2
229,750 - 0.9
229,868 + 12008 mRNA_3640 0.12 -0.7
229,870 - 12008 mRNA_3640 0.12 0.7
229,872 - 12008 mRNA_3640 0.12 0.4