Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3596

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129467 to 131137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131256 to 132687 11964 mRNA_3597: 11965 - K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1, at 132867 to 134971 11965

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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130,317 - 11963 mRNA_3595 0.51 0.2
130,326 + 11963 mRNA_3595 0.51 0.9
130,453 - 11963 mRNA_3595 0.59 0.9
130,462 + 11963 mRNA_3595 0.60 -0.4
131,008 + 0.2
131,062 + -0.2
131,074 + -0.2
131,076 + 0.3
131,198 + 0.4
131,200 + -0.2
131,254 - 0.6
131,268 - -1.4
131,268 - 0.4
131,276 - 0.6
131,276 - 0.7
131,277 + -1.3
131,278 - -0.1
131,278 + 0.5
131,279 + 1.0
131,285 + -0.6
131,287 + 2.0
131,302 - -0.1
131,302 - 0.0
131,303 - -0.5
131,304 + 0.9
131,308 + -1.0
131,310 + 0.5
131,312 + 0.5
131,318 - 0.2
131,320 - 0.7
131,326 + 0.5
131,326 + 0.1
131,337 + 1.5
131,338 + 0.3
131,339 + -1.4
131,340 - -0.4
131,352 - 0.3
131,354 - 0.5
131,367 - -0.4
131,418 - 11964 mRNA_3596 0.11 0.4
131,425 - 11964 mRNA_3596 0.12 0.7
131,449 - 11964 mRNA_3596 0.13 -0.8
131,467 - 11964 mRNA_3596 0.15 0.9
131,492 + 11964 mRNA_3596 0.16 1.2
131,607 + 11964 mRNA_3596 0.25 -0.1
131,608 + 11964 mRNA_3596 0.25 0.7
131,654 + 11964 mRNA_3596 0.28 1.2
131,877 + 11964 mRNA_3596 0.43 0.0
131,921 - 11964 mRNA_3596 0.46 1.1
132,223 + 11964 mRNA_3596 0.68 0.1
132,653 + 0.5
132,816 - -0.0
132,941 + 0.1
133,065 - 0.2
133,293 - 11965 mRNA_3597 0.20 0.4