Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,174 - 11537 mRNA_3169 0.65 0.6
1,174 + 11537 mRNA_3169 0.65 -0.8
1,259 + 11537 mRNA_3169 0.73 -0.5
1,265 + 11537 mRNA_3169 0.74 -0.2
1,268 + 11537 mRNA_3169 0.74 0.5
1,269 - 11537 mRNA_3169 0.74 0.2
1,288 - 11537 mRNA_3169 0.76 -0.4
1,297 + 11537 mRNA_3169 0.77 -1.7
1,303 - 11537 mRNA_3169 0.78 0.0
1,399 + 11537 mRNA_3169 0.87 0.0
1,412 - 11537 mRNA_3169 0.88 -0.0
1,419 - 11537 mRNA_3169 0.89 -0.0
1,423 - 11537 mRNA_3169 0.90 -4.0
1,429 - -1.2
1,453 + 0.2
1,459 + -0.0
1,459 + -0.3
1,460 - 0.2
1,461 + -0.7
1,462 + 1.3
1,467 + -0.4
1,470 - -0.1
1,474 - 0.0
1,485 + -1.1
1,520 + -0.2
1,523 + 1.4
1,531 - -0.5
1,537 + 0.4
1,541 + 1.0
1,562 + 0.4
1,567 + 0.1
1,572 + 0.4
1,582 - -1.6
1,584 - 0.3
1,589 + -1.3
1,596 - 0.5
1,601 - -0.6
1,602 + -1.0
1,605 + -2.0
1,609 + -1.3
1,616 + -0.1
1,636 + -0.6
1,654 + -0.5
1,656 - 0.7
1,666 + -0.0
1,675 - -1.1
1,682 - -1.6
1,697 - -1.1
1,709 + 0.6
1,709 - 0.0
1,711 + 0.1
1,718 - -0.1
1,719 + 0.2
1,722 - 0.3
1,723 + -0.2
1,725 - -0.1
1,725 - 1.2
1,727 + 0.6
1,730 + -1.5
1,731 + 0.1
1,732 + 0.0
1,732 + 0.7
1,734 + 1.0
1,734 + -0.2
1,734 + 0.6
1,739 - -0.3
1,740 + -0.1
1,744 - 0.4
1,747 + -0.5
1,749 + -1.2
1,759 + -0.6
1,759 + -1.1
1,759 + 0.5
1,761 + 0.3
1,763 + -0.1
1,765 + -0.2
1,767 + 0.2
1,769 + 0.2
1,772 + -0.9
1,772 + 0.6
1,774 + -0.5
1,774 + 1.2
1,775 + -0.9
1,776 - -0.2
1,776 + -0.2
1,777 + -0.6
1,778 + 0.8
1,778 - -0.4
1,781 - 1.0
1,783 - -0.0
1,783 - 1.2
1,783 - 1.6
1,783 - 0.6
1,784 + -1.3
1,789 + 0.4
1,789 - -0.4
1,791 + -0.2
1,792 + -0.2
1,793 + 0.8
1,795 + -0.9
1,796 + -1.0
1,796 - 0.0
1,798 + 1.1
1,800 + 0.3
1,801 + -0.5
1,805 + -0.2
1,805 + -0.9
1,807 + 0.1
1,813 - -0.4
1,814 + -0.8
1,814 + -0.1
1,818 - 0.8
1,851 - -0.4
1,874 + 0.1
1,881 - 0.3
1,885 - 0.1
1,891 - -2.7
1,896 - -0.4
1,912 + 0.7
1,912 + -0.6
1,914 - 0.1
1,916 - -0.4
1,917 - -0.7
1,919 + -0.9
1,922 - 1.4
1,923 - -0.3
1,934 - -0.8
1,935 + -0.5
1,938 - -0.4
1,938 - -1.1
1,940 - -0.6
1,941 + -0.2
1,941 + -0.5
1,942 + -1.2
1,943 - -1.0
1,944 + -0.1
1,944 - -0.7
1,945 - -0.0
1,945 + -0.1
1,946 - -0.8
1,947 + 0.5
1,960 - -0.8
1,968 + 1.5
1,980 + -1.4
2,015 + 0.5
2,067 - -1.2
2,081 - -0.9
2,091 + -0.2
2,220 + -1.1
2,229 - 0.4
2,235 - -1.0
2,237 - -1.0
2,242 + 1.2
2,242 - -0.4
2,245 - 0.2
2,248 - -0.2
2,251 + -1.1
2,254 - -0.6
2,261 + -1.2
2,262 - -0.9
2,266 + 0.8
2,268 + 0.1
2,400 + 11538 mRNA_3170 0.21 0.0
2,401 - 11538 mRNA_3170 0.21 -1.3
2,404 + 11538 mRNA_3170 0.22 -2.0
2,414 + 11538 mRNA_3170 0.23 1.0
2,420 - 11538 mRNA_3170 0.23 0.4
2,439 + 11538 mRNA_3170 0.25 -1.2
2,446 + 11538 mRNA_3170 0.26 0.9
2,470 - 11538 mRNA_3170 0.28 -1.0
2,516 - 11538 mRNA_3170 0.32 -1.3
2,550 - 11538 mRNA_3170 0.35 -1.3
2,553 + 11538 mRNA_3170 0.36 1.3
2,569 + 11538 mRNA_3170 0.37 1.6
2,573 - 11538 mRNA_3170 0.38 -1.6
2,581 + 11538 mRNA_3170 0.38 -0.3
2,582 + 11538 mRNA_3170 0.38 -0.9
2,611 + 11538 mRNA_3170 0.41 -0.6
2,698 + 11538 mRNA_3170 0.49 0.2
2,699 + 11538 mRNA_3170 0.49 -1.3
2,755 + 11538 mRNA_3170 0.55 1.4
2,853 + 11538 mRNA_3170 0.64 -0.6
3,014 - 11538 mRNA_3170 0.79 -0.5
3,407 - -0.1
3,547 - 0.1
3,604 + 0.8
3,607 + 0.5
3,739 - -1.1
3,768 + 0.1
4,061 + -0.6
4,136 - 0.6
4,162 + -0.7
4,176 + 2.1