Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3118

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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358,471 - 11485 mRNA_3117 0.66 0.4
358,472 + 11485 mRNA_3117 0.67 0.2
358,614 + 11485 mRNA_3117 0.80 -0.6
358,627 - 11485 mRNA_3117 0.81 0.4
358,627 + 11485 mRNA_3117 0.81 1.5
358,638 - 11485 mRNA_3117 0.82 1.9
358,734 + 0.2
358,761 - 0.3
358,782 + 1.7
358,892 + 1.4
358,905 + 0.5
358,905 - 0.0
358,907 - -2.1
358,912 + 0.6
358,916 - -0.9
358,927 + 0.8
358,930 + 2.0
358,934 + 0.2
359,049 - 0.7
359,052 - 1.0
359,058 - 0.3
359,059 + 0.0
359,064 - 1.5
359,070 + 0.8
359,084 + 2.8
359,086 + 0.8
359,195 - -1.1
359,231 - 1.5
359,231 - -0.7
359,269 + -0.2
359,303 - -0.1
359,346 - 2.2
359,369 + 0.7
359,492 - 0.4
359,497 + -0.1
359,528 - 0.1
359,549 - -0.7
359,553 + -1.1
359,618 - 0.5
359,644 - 0.5
359,659 + 0.8
359,668 + 0.7
359,668 + 0.0
359,801 - 11486 mRNA_3118 0.14 -0.0
359,804 + 11486 mRNA_3118 0.14 0.1
359,947 - 11486 mRNA_3118 0.20 -0.0
359,961 - 11486 mRNA_3118 0.20 -1.0
360,161 + 11486 mRNA_3118 0.27 0.0
360,197 - 11486 mRNA_3118 0.29 1.5
360,365 - 11486 mRNA_3118 0.35 0.6
360,377 - 11486 mRNA_3118 0.35 0.1
360,482 + 11486 mRNA_3118 0.39 -0.2
360,832 + 11486 mRNA_3118 0.52 -1.7
360,930 + 11486 mRNA_3118 0.56 1.3
360,956 - 11486 mRNA_3118 0.57 0.9
361,004 + 11486 mRNA_3118 0.59 0.5
361,107 - 11486 mRNA_3118 0.62 1.2
361,162 + 11486 mRNA_3118 0.64 0.2
361,436 - 11486 mRNA_3118 0.75 -0.0
361,446 - 11486 mRNA_3118 0.75 1.7
361,565 + 11486 mRNA_3118 0.79 0.1
361,692 - 11486 mRNA_3118 0.84 0.0
361,701 - 11486 mRNA_3118 0.84 1.2
361,716 - 11486 mRNA_3118 0.85 -0.0
361,744 + 11486 mRNA_3118 0.86 -0.7
362,107 - 1.8
362,201 - 2.1
362,417 - 0.5
362,461 + -0.8
362,669 - -0.0
362,684 + 1.4
362,753 + -1.1
362,863 + -0.6
362,910 + -0.8
362,970 + 0.4
363,030 + 0.3