Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3085

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284368 to 286217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286949 to 288955 11454

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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283,419 - 0.4
283,531 + 0.8
283,534 + 0.5
283,545 + 2.3
283,545 + 0.5
283,547 - 0.8
283,563 + 1.8
283,580 + 2.9
283,710 + -0.4
283,826 - -0.1
283,827 + 0.8
283,844 + 1.4
283,854 + -1.3
283,858 + -1.2
283,858 + 0.5
283,860 - -0.0
283,861 + 0.3
283,863 - 0.5
283,864 + 2.2
283,865 + -0.2
283,869 - 0.3
283,995 + 0.1
283,996 - -0.6
284,003 + 0.2
284,012 + 0.2
284,017 + 0.8
284,047 + -1.1
284,134 + -0.2
284,141 - 0.1
284,143 - 0.4
284,148 + -0.9
284,167 + 0.2
284,170 - -0.5
284,171 + -1.3
284,222 + 0.1
284,282 + 0.4
284,302 - 0.1
284,309 + -0.1
284,321 + 0.1
284,324 + -0.6
284,326 + 0.7
284,331 - 2.0
284,331 - 1.8
284,331 - -0.9
284,331 + -0.2
284,332 - 0.6
284,340 + 0.0
284,444 + -1.5
284,451 - 0.1
284,452 + 1.3
284,454 - -0.2
284,465 - 0.9
284,474 + -0.9
284,477 - 1.8
284,481 - -1.4
284,605 + 11453 mRNA_3085 0.13 0.0
284,752 + 11453 mRNA_3085 0.21 0.9
284,905 - 11453 mRNA_3085 0.29 -1.5
284,917 - 11453 mRNA_3085 0.30 -0.4
285,035 - 11453 mRNA_3085 0.36 2.2
285,040 - 11453 mRNA_3085 0.36 1.3
285,172 + 11453 mRNA_3085 0.43 -0.5
285,452 - 11453 mRNA_3085 0.59 0.4
285,558 - 11453 mRNA_3085 0.64 1.1
285,595 - 11453 mRNA_3085 0.66 1.2
285,666 + 11453 mRNA_3085 0.70 0.8
285,739 + 11453 mRNA_3085 0.74 0.7
285,744 - 11453 mRNA_3085 0.74 0.1
286,039 + -1.5
286,151 + 0.3
286,335 + 0.4
286,455 - -2.1
286,462 - -1.4
286,608 - 0.1
286,614 + 1.2
286,614 - -0.5
286,616 - 0.8
286,754 - 1.2
287,058 - -0.3