Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2868

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403264 to 404865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405461 to 407348 11236 mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407863 to 408924 11237

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
404,502 - 11235 mRNA_2867 0.77 2.4
404,521 - 11235 mRNA_2867 0.78 -0.7
404,800 + 0.7
404,829 - -0.0
404,835 + -1.1
404,998 - 0.5
405,001 + 0.6
405,009 - 0.6
405,010 + 0.2
405,020 - -0.0
405,028 + -0.0
405,029 - 0.4
405,049 - 0.5
405,077 - -0.4
405,080 + 0.4
405,130 - -1.3
405,143 - 0.1
405,157 + -0.3
405,162 - 1.7
405,167 + 0.5
405,168 - 0.9
405,186 + 0.8
405,202 + -0.5
405,214 - -0.1
405,229 + 1.0
405,241 - 0.7
405,250 - -0.1
405,262 + 0.7
405,266 + 0.7
405,269 + -1.0
405,274 + -0.1
405,341 + 0.0
405,378 - 1.1
405,383 + 0.3
405,394 + 0.4
405,396 + 1.7
405,936 + 11236 mRNA_2868 0.25 0.6
405,966 + 11236 mRNA_2868 0.27 0.2
406,227 - 11236 mRNA_2868 0.41 -0.1
406,232 + 11236 mRNA_2868 0.41 1.1
406,240 - 11236 mRNA_2868 0.41 -1.0
406,269 + 11236 mRNA_2868 0.43 0.6
406,544 - 11236 mRNA_2868 0.57 -0.5
406,817 + 11236 mRNA_2868 0.72 1.4
406,837 - 11236 mRNA_2868 0.73 -1.1
406,975 + 11236 mRNA_2868 0.80 0.3
407,110 - 11236 mRNA_2868 0.87 0.5
407,142 - 11236 mRNA_2868 0.89 0.3
407,248 + 0.6
407,253 + -0.1
407,253 + 0.5
407,254 - -1.2
407,269 + 0.1
407,409 - 2.0
407,419 + -1.5
407,434 + 0.3
407,458 + 1.9
407,480 - -0.2
407,482 - -0.4
407,498 - 1.1
407,505 + -0.3
407,537 - -0.5
407,538 - 0.5
407,546 + 2.1
407,549 - -0.0
407,552 - -0.1
407,552 - 0.2
407,552 - 0.2
407,557 + 0.7
407,558 + 0.7
407,570 - 0.3
407,574 - 0.9
407,693 - 0.6
407,699 - -0.1
407,701 + 0.3
407,715 + -0.2
407,718 + 1.6
407,720 + 1.2
407,736 + 0.4
407,840 - -0.2
407,840 - -0.5
407,844 - 0.1
407,844 - -0.1
407,849 + -0.9
407,859 - 1.0
407,864 + -0.2
407,865 - 0.2
407,868 - 1.0
407,877 - 0.7
408,144 + 11237 mRNA_2869 0.26 -0.1