Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2760

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2759: 11127 - K12158 NEDD8 ubiquitin-like protein Nedd8, at 152848 to 153537 11127 mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153952 to 156416 11128 mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157082 to 158929 11129

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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153,623 - 0.9
153,770 + 1.1
153,772 + 0.5
153,903 - 1.8
153,908 - -0.4
153,914 - 0.3
154,316 - 11128 mRNA_2760 0.15 -0.7
154,509 + 11128 mRNA_2760 0.23 1.4
154,516 - 11128 mRNA_2760 0.23 -0.9
154,518 + 11128 mRNA_2760 0.23 1.9
154,612 - 11128 mRNA_2760 0.27 -0.9
154,944 + 11128 mRNA_2760 0.40 1.0
156,065 - 11128 mRNA_2760 0.86 0.6
156,107 + 11128 mRNA_2760 0.87 0.4
156,297 + 0.8
156,368 - 0.5
156,438 - -0.3
156,442 + -0.2
156,473 - 0.6
156,493 - -0.2
156,521 + -0.1
156,535 - -0.0
156,535 + -2.3
156,544 + -0.3
156,555 - 1.4
156,558 - -0.2
156,561 + -0.4
156,561 - -0.2
156,567 - -1.5
156,691 + -0.4
156,838 + 0.1
156,938 - -0.6
156,956 + -1.4
156,976 - -3.0
156,977 + -2.9
156,978 - -1.1
156,984 - -2.2
156,992 + -1.7
156,997 + -1.7
156,999 + -1.5
157,002 - -1.7
157,002 - -1.9
157,007 - -1.1
157,009 + -1.4
157,012 + 1.0
157,029 - -1.6
157,030 + -1.8
157,051 - -1.1
157,173 + -0.7
157,192 + 1.0
157,195 + -0.9
157,203 - -1.2
157,207 + -1.8
157,222 + -1.9
157,308 + 11129 mRNA_2761 0.12 -0.9
157,353 - 11129 mRNA_2761 0.15 -0.9
157,353 - 11129 mRNA_2761 0.15 -1.3
157,379 + 11129 mRNA_2761 0.16 -1.3
157,382 + 11129 mRNA_2761 0.16 -1.4
157,385 + 11129 mRNA_2761 0.16 -1.2
157,399 + 11129 mRNA_2761 0.17 -1.8