Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2290

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536074 to 538335 10657 mRNA_2290: 10658 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 538803 to 539885 10658

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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537,930 + 10657 mRNA_2289 0.82 0.0
537,964 - 10657 mRNA_2289 0.84 1.2
538,086 - 10657 mRNA_2289 0.89 -0.6
538,322 + 0.6
538,355 - 0.6
538,368 - 3.3
538,386 - -0.9
538,437 - -0.8
538,452 - 1.5
538,469 - -1.9
538,475 - -0.9
538,480 - -0.2
538,612 + -1.2
538,619 + -0.5
538,976 - 10658 mRNA_2290 0.16 0.0
539,126 - 10658 mRNA_2290 0.30 -0.2
539,439 - 10658 mRNA_2290 0.59 0.4
539,577 + 10658 mRNA_2290 0.71 -1.1
539,583 + 10658 mRNA_2290 0.72 -0.0
539,756 + 10658 mRNA_2290 0.88 0.9
539,899 - -0.5
540,336 - 1.4
540,624 + 1.5
540,630 + -0.3
540,657 + 0.6
540,764 - 0.8
540,791 - 1.3
540,812 + 0.6
540,820 + -0.2
540,829 + -0.4