Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2195

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319466 to 323008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323325 to 326120 10564

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
318,739 - -0.1
318,774 + 1.0
318,978 + 0.2
319,016 + -1.8
319,059 + 2.0
319,069 + -0.5
319,172 + 0.6
319,175 - -0.5
319,213 - -0.9
319,261 - 1.1
319,268 - 1.4
319,277 + 0.4
319,286 - 1.7
319,321 - 0.2
319,347 - -0.1
319,357 + 0.6
319,369 + -2.0
319,401 + 3.3
319,403 - -0.5
319,481 + 0.4
319,628 - -1.4
319,790 + -0.5
319,911 + 10563 mRNA_2195 0.13 0.6
319,941 + 10563 mRNA_2195 0.13 1.4
319,965 + 10563 mRNA_2195 0.14 -1.1
320,051 - 10563 mRNA_2195 0.17 -1.7
320,089 + 10563 mRNA_2195 0.18 0.5
320,243 + 10563 mRNA_2195 0.22 -0.8
320,409 + 10563 mRNA_2195 0.27 -0.2
320,526 - 10563 mRNA_2195 0.30 0.5
320,577 - 10563 mRNA_2195 0.31 -1.0
320,627 + 10563 mRNA_2195 0.33 0.1
320,644 - 10563 mRNA_2195 0.33 -1.6
320,700 - 10563 mRNA_2195 0.35 -0.8
320,700 + 10563 mRNA_2195 0.35 -0.4
320,802 + 10563 mRNA_2195 0.38 0.4
320,811 + 10563 mRNA_2195 0.38 -0.4
320,870 - 10563 mRNA_2195 0.40 0.2
321,251 - 10563 mRNA_2195 0.50 0.0
321,261 + 10563 mRNA_2195 0.51 1.3
321,271 + 10563 mRNA_2195 0.51 0.2
321,390 + 10563 mRNA_2195 0.54 -0.5
321,411 + 10563 mRNA_2195 0.55 0.5
321,569 + 10563 mRNA_2195 0.59 0.2
321,588 - 10563 mRNA_2195 0.60 0.8
321,762 - 10563 mRNA_2195 0.65 -1.3
321,854 + 10563 mRNA_2195 0.67 0.1
321,877 + 10563 mRNA_2195 0.68 -0.7
321,877 + 10563 mRNA_2195 0.68 -0.3
321,880 + 10563 mRNA_2195 0.68 -0.0
321,883 - 10563 mRNA_2195 0.68 0.4
321,917 - 10563 mRNA_2195 0.69 -0.7
321,988 - 10563 mRNA_2195 0.71 2.4
322,060 + 10563 mRNA_2195 0.73 1.6
322,064 + 10563 mRNA_2195 0.73 -0.5
322,151 - 10563 mRNA_2195 0.76 -0.9
322,222 - 10563 mRNA_2195 0.78 -0.9
322,313 - 10563 mRNA_2195 0.80 0.1
322,331 - 10563 mRNA_2195 0.81 -0.4
322,463 + 10563 mRNA_2195 0.85 -0.2
322,578 + 10563 mRNA_2195 0.88 -1.8
322,897 - 0.7
323,314 + 0.1
323,318 - 0.2
323,445 + -0.2
323,627 + 10564 mRNA_2196 0.11 0.5
323,823 - 10564 mRNA_2196 0.18 -0.4
323,843 - 10564 mRNA_2196 0.19 -0.4