Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2179

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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267,372 - 1.1
267,514 - 0.4
267,523 + -0.6
267,642 - -0.3
267,682 + -0.4
267,714 + 1.9
267,777 + 0.2
267,957 - 1.2
267,965 - 0.8
267,970 + -1.1
267,973 - 2.2
267,976 + 0.4
267,990 + 0.8
268,073 - -0.4
268,307 + 2.2
268,399 - 0.6
268,421 + 1.0
268,684 - 1.5
268,766 - 10547 mRNA_2179 0.11 0.6
268,873 - 10547 mRNA_2179 0.13 1.8
268,922 + 10547 mRNA_2179 0.14 -0.2
268,956 + 10547 mRNA_2179 0.14 0.3
269,052 + 10547 mRNA_2179 0.16 -0.3
269,436 - 10547 mRNA_2179 0.24 -0.6
269,682 - 10547 mRNA_2179 0.29 0.4
269,710 - 10547 mRNA_2179 0.29 1.0
269,727 - 10547 mRNA_2179 0.30 0.7
270,192 - 10547 mRNA_2179 0.39 0.2
270,345 + 10547 mRNA_2179 0.42 -1.7
270,432 + 10547 mRNA_2179 0.43 -0.7
271,142 - 10547 mRNA_2179 0.57 0.8
271,241 - 10547 mRNA_2179 0.59 0.5
271,242 + 10547 mRNA_2179 0.59 -0.5
271,986 - 10547 mRNA_2179 0.74 -2.1
272,150 + 10547 mRNA_2179 0.77 1.7
272,414 + 10547 mRNA_2179 0.82 1.4
272,818 - -0.9
273,226 - 0.4
273,232 - -0.2
273,263 - -0.4
273,374 - 0.8
273,402 + -2.4
273,529 - 0.0
273,531 - 1.6
273,542 + 0.5
273,560 + -0.0
273,565 - 0.6
273,566 + -0.1
273,846 + 0.7
274,173 - 10548 mRNA_2180 0.10 -0.1
274,231 - 10548 mRNA_2180 0.13 0.2