Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2106

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2105: 10473 - K17991 PXG peroxygenase, at 85042 to 86447 10473 mRNA_2106: 10474 - K15710 SHPRH E3 ubiquitin-protein ligase SHPRH, at 86774 to 93150 10474 mRNA_2107: 10475 - K01918 panC pantoate--beta-alanine ligase, at 93856 to 95198 10475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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86,084 - 10473 mRNA_2105 0.74 0.7
86,133 - 10473 mRNA_2105 0.78 0.4
86,249 - 10473 mRNA_2105 0.86 0.2
86,386 + 0.6
86,489 - -1.2
86,530 + 0.0
86,581 + 1.6
86,654 - 0.4
86,694 - -0.9
86,735 + 0.9
86,795 - -0.4
86,812 - -0.1
86,981 - -0.8
87,006 + -1.2
87,077 + -0.6
87,117 + 0.5
87,301 + 2.0
87,327 + 1.6
87,419 - 10474 mRNA_2106 0.10 1.0
87,432 - 10474 mRNA_2106 0.10 0.1
87,435 + 10474 mRNA_2106 0.10 2.2
87,558 - 10474 mRNA_2106 0.12 0.8
88,069 - 10474 mRNA_2106 0.20 -0.0
88,121 - 10474 mRNA_2106 0.21 -1.5
88,146 - 10474 mRNA_2106 0.22 0.5
88,150 - 10474 mRNA_2106 0.22 0.6
88,161 + 10474 mRNA_2106 0.22 1.0
88,170 - 10474 mRNA_2106 0.22 1.1
88,263 + 10474 mRNA_2106 0.23 2.5
88,372 + 10474 mRNA_2106 0.25 0.6
88,661 + 10474 mRNA_2106 0.30 0.5
89,306 - 10474 mRNA_2106 0.40 -0.5
89,354 - 10474 mRNA_2106 0.40 2.6
89,505 + 10474 mRNA_2106 0.43 -0.4
89,534 - 10474 mRNA_2106 0.43 -0.3
89,544 + 10474 mRNA_2106 0.43 -0.6
89,544 + 10474 mRNA_2106 0.43 0.1
89,603 + 10474 mRNA_2106 0.44 0.5
89,619 + 10474 mRNA_2106 0.45 -0.7
89,807 - 10474 mRNA_2106 0.48 1.8
90,128 - 10474 mRNA_2106 0.53 -0.9
90,263 - 10474 mRNA_2106 0.55 -0.9
90,273 - 10474 mRNA_2106 0.55 0.2
90,285 + 10474 mRNA_2106 0.55 0.2
90,295 - 10474 mRNA_2106 0.55 -0.9
90,419 + 10474 mRNA_2106 0.57 0.2
90,452 - 10474 mRNA_2106 0.58 -0.8
90,543 + 10474 mRNA_2106 0.59 -1.0
90,816 - 10474 mRNA_2106 0.63 1.1
91,252 - 10474 mRNA_2106 0.70 -0.5
91,566 + 10474 mRNA_2106 0.75 -0.9
91,703 + 10474 mRNA_2106 0.77 0.9
91,732 - 10474 mRNA_2106 0.78 1.0
91,872 - 10474 mRNA_2106 0.80 0.6
91,875 + 10474 mRNA_2106 0.80 -0.1
92,270 + 10474 mRNA_2106 0.86 -0.6
92,299 - 10474 mRNA_2106 0.87 1.0
92,757 - -0.3
92,912 + -0.8
93,027 + 0.4
93,052 - -0.3
93,165 - 0.2
93,174 - 2.2
93,202 - -0.1
93,246 + -0.8
93,343 + 0.2
93,364 + 0.5
93,539 + 0.8
93,807 + -0.4
93,893 - 0.1
93,944 - -1.5
94,085 + 10475 mRNA_2107 0.17 -1.0