Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2003

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712088 to 714509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714669 to 717655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718267 to 719987 10372

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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714,556 - 0.0
714,566 - -3.1
714,571 - 0.8
714,575 - -0.4
714,577 + -0.4
714,578 + -0.3
714,580 - 0.7
714,580 - 0.8
714,580 - 1.1
714,580 - -0.0
714,584 - 1.2
714,588 + -0.6
714,601 - 0.5
714,602 + 1.3
714,607 + -1.3
714,643 + 1.8
714,644 + 2.0
714,645 + -0.1
714,649 - 0.9
714,662 + -0.9
714,664 - 0.1
714,671 - -1.3
714,679 - 0.2
714,770 + 0.8
714,776 - 1.0
714,795 + 1.1
715,485 + 10371 mRNA_2003 0.27 0.9
715,510 + 10371 mRNA_2003 0.28 1.5
715,620 - 10371 mRNA_2003 0.32 1.5
715,635 - 10371 mRNA_2003 0.32 1.3
715,896 + 10371 mRNA_2003 0.41 0.8
715,925 - 10371 mRNA_2003 0.42 -1.3
715,926 + 10371 mRNA_2003 0.42 1.0
715,929 + 10371 mRNA_2003 0.42 2.2
716,215 + 10371 mRNA_2003 0.52 1.1
716,645 - 10371 mRNA_2003 0.66 1.2
717,067 - 10371 mRNA_2003 0.80 0.9
717,224 - 10371 mRNA_2003 0.86 2.4
717,361 - 0.1
717,806 - 0.1
717,947 - -0.9
717,962 + 2.9
717,971 + 0.8
718,113 - 0.9
718,130 + 0.6
718,424 + 1.4