Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1534

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1533: 9901 - K04649 HIP2, UBC1 ubiquitin-conjugating enzyme (huntingtin interacting protein 2), at 528782 to 530057 9901 mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530272 to 532362 9902 mRNA_1535: 9903 - K12471 EPN epsin, at 532822 to 534645 9903

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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529,799 - 9901 mRNA_1533 0.80 -1.0
529,821 - 9901 mRNA_1533 0.81 -0.9
530,259 - 0.4
531,239 - 9902 mRNA_1534 0.46 2.7
531,247 + 9902 mRNA_1534 0.47 1.3
531,979 - 9902 mRNA_1534 0.82 0.9
531,996 + 9902 mRNA_1534 0.82 2.7
532,413 - -0.3
532,415 - -1.4
532,419 - 0.2
532,426 + -0.2
532,428 - 0.7
532,433 + -0.6
532,435 + 0.4
532,442 + -1.9
532,444 + 0.5
532,573 - -1.1
532,576 - -0.4
532,578 - -0.1
532,580 + 1.2
532,714 + -0.6
532,717 - -0.9
532,718 + 2.1
532,720 - 0.3
532,741 + 0.9
533,032 + 9903 mRNA_1535 0.12 0.7
533,325 + 9903 mRNA_1535 0.28 -0.4