Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1515

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883 mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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487,453 - 9882 mRNA_1514 0.51 1.4
487,913 - 9882 mRNA_1514 0.79 -0.4
488,058 + 9882 mRNA_1514 0.87 -0.3
488,073 + 9882 mRNA_1514 0.88 -1.0
488,166 - 1.1
488,185 - 0.9
488,341 - -0.4
488,372 + 1.2
488,382 - -0.1
488,493 - -0.9
488,498 - -1.9
488,500 - -0.9
488,505 + -0.3
488,513 + 2.3
488,521 + 2.0
488,647 + 1.4
488,793 + 9883 mRNA_1515 0.11 4.1
488,822 + 9883 mRNA_1515 0.11 0.1
488,926 + 9883 mRNA_1515 0.15 0.7
489,243 + 9883 mRNA_1515 0.24 0.5
489,275 + 9883 mRNA_1515 0.25 0.9
489,584 - 9883 mRNA_1515 0.35 -1.7
489,709 - 9883 mRNA_1515 0.38 0.7
489,788 + 9883 mRNA_1515 0.41 1.1
490,130 + 9883 mRNA_1515 0.51 1.2
490,246 - 9883 mRNA_1515 0.55 0.6
490,385 - 9883 mRNA_1515 0.59 1.0
490,566 - 9883 mRNA_1515 0.64 1.3
490,610 - 9883 mRNA_1515 0.66 1.2
491,018 + 9883 mRNA_1515 0.78 -0.1
491,321 - 9883 mRNA_1515 0.87 0.5
491,327 - 9883 mRNA_1515 0.87 1.0
491,483 - 1.7
491,490 + 0.4
491,616 - 1.2
491,636 - 0.4
491,753 + 1.9
491,756 - 0.2
491,758 + 1.9
491,759 + 1.5
491,896 - 1.7
491,900 + -0.8
491,904 - 1.1
491,910 - -0.0
491,912 + 2.1
491,932 - -0.8
492,072 + -1.4
492,074 - -0.6
492,076 - -0.9
492,128 + -2.0
492,133 - -1.6
492,204 - 0.1