Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1501

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039 9868 mRNA_1501: 9869 - Hypothetical Protein, at 459271 to 459744 9869 mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460348 to 464473 9870

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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458,319 + 0.4
458,335 - -0.3
458,775 - 9868 mRNA_1500 0.66 0.3
459,070 - -0.9
459,183 + -3.9
459,198 - -1.0
459,205 - 0.0
459,209 + -0.7
459,216 - -0.4
459,225 + 0.2
459,243 - -0.5
459,243 - -0.7
459,244 - -0.5
459,245 - 0.6
459,256 - -0.4
459,257 + 1.1
459,270 - -0.2
459,313 - 0.5
459,326 + 9869 mRNA_1501 0.12 -4.9
459,329 + 9869 mRNA_1501 0.12 -0.1
459,339 - 9869 mRNA_1501 0.14 0.5
459,342 + 9869 mRNA_1501 0.15 0.0
459,351 + 9869 mRNA_1501 0.17 -0.1
459,360 + 9869 mRNA_1501 0.19 0.0
459,360 + 9869 mRNA_1501 0.19 0.1
459,461 - 9869 mRNA_1501 0.40 -1.2
459,468 - 9869 mRNA_1501 0.42 0.0
459,471 - 9869 mRNA_1501 0.42 0.4
459,478 + 9869 mRNA_1501 0.44 1.3
459,482 - 9869 mRNA_1501 0.45 -0.7
459,482 - 9869 mRNA_1501 0.45 0.7
459,485 + 9869 mRNA_1501 0.45 -1.8
459,487 - 9869 mRNA_1501 0.46 -0.0
459,488 - 9869 mRNA_1501 0.46 2.8
459,488 + 9869 mRNA_1501 0.46 3.1
459,488 + 9869 mRNA_1501 0.46 0.4
459,492 - 9869 mRNA_1501 0.47 0.1
459,504 + 9869 mRNA_1501 0.49 -1.0
459,532 + 9869 mRNA_1501 0.55 1.4
459,633 - 9869 mRNA_1501 0.76 1.3
459,639 - 9869 mRNA_1501 0.78 -0.2
459,752 - -0.7
459,771 + 0.2
459,771 - -0.1
459,797 - -2.4
459,797 - -2.3
459,812 + -1.5
459,815 + 1.0
459,839 - -1.2
459,891 + 0.0
459,959 - -0.3
459,962 + 0.9
460,067 + -1.6
460,114 + -1.1
460,127 - 0.3
460,165 - -1.0
460,213 + -2.0
460,244 + 0.3
460,371 + -1.7