Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1488

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855 mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423330 to 427670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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423,352 - 1.6
423,472 - -1.0
423,604 - 0.1
423,724 - 0.2
423,778 + 9856 mRNA_1488 0.10 0.3
423,835 + 9856 mRNA_1488 0.12 -1.4
424,172 + 9856 mRNA_1488 0.19 -1.7
424,221 - 9856 mRNA_1488 0.21 0.6
424,416 - 9856 mRNA_1488 0.25 -1.3
424,520 + 9856 mRNA_1488 0.27 1.4
424,601 + 9856 mRNA_1488 0.29 -0.7
424,906 - 9856 mRNA_1488 0.36 -2.7
425,060 + 9856 mRNA_1488 0.40 -0.5
425,061 - 9856 mRNA_1488 0.40 -0.3
425,496 + 9856 mRNA_1488 0.50 -1.0
425,697 + 9856 mRNA_1488 0.55 0.3
425,708 - 9856 mRNA_1488 0.55 0.3
425,820 + 9856 mRNA_1488 0.57 -0.3
425,823 - 9856 mRNA_1488 0.57 0.3
426,112 - 9856 mRNA_1488 0.64 1.4
426,517 - 9856 mRNA_1488 0.73 0.1
426,649 - 9856 mRNA_1488 0.76 -0.2
427,144 - 9856 mRNA_1488 0.88 0.0
427,153 + 9856 mRNA_1488 0.88 0.7
427,159 + 9856 mRNA_1488 0.88 -0.6
427,238 - -0.6
427,238 + -0.3
427,239 + 1.5
427,263 + 0.2
427,264 - -0.4
427,264 + 0.1
427,282 + -0.6
427,291 + -0.7
427,426 + -0.5
427,438 + 0.2
427,438 - 0.3
427,455 - -0.5
427,468 + 0.6
427,518 + -0.4
427,544 - 0.4
427,575 + -0.3
427,576 - -2.2
427,580 + -1.0
427,598 + -1.5
427,703 - 0.1
427,719 - 1.1
427,725 - -1.6
427,730 - -0.3
427,730 - 0.6
427,746 - -0.2
427,766 - -1.0
427,766 + -1.9
427,773 + 1.0
427,774 + 0.5
427,907 - 0.3
427,948 + 0.8
427,949 + 1.6
427,952 + 0.7
427,991 + -0.2
428,272 + -2.2
428,361 - 9857 mRNA_1489 0.14 -0.9
428,405 + 9857 mRNA_1489 0.19 0.5
428,499 + 9857 mRNA_1489 0.30 -1.3