Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1474

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388451 to 391356 9842 mRNA_1475: 9843 - K07374 TUBA tubulin alpha, at 391835 to 393525 9843

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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387,475 + 9841 mRNA_1473 0.87 1.1
387,634 + 0.3
387,636 + 1.4
387,740 + 0.6
387,910 + 1.9
387,940 + 0.4
388,059 - -0.2
388,062 + 4.8
388,064 - 0.3
388,199 - -1.9
388,205 - -1.1
388,219 - -0.1
388,223 - 0.6
388,229 - 0.3
388,229 + 1.8
388,230 + 0.6
388,235 - 0.1
388,235 + -0.1
388,235 + -0.7
388,238 + -1.2
388,240 + 0.7
388,246 + -1.4
388,251 + 0.1
388,255 - -0.4
388,345 + -0.5
388,365 - -0.7
388,388 + 0.3
388,396 + -1.1
388,502 - 0.7
388,670 - 0.5
388,734 - 0.4
388,795 + 9842 mRNA_1474 0.12 0.2
389,377 - 9842 mRNA_1474 0.32 0.3
389,817 + 9842 mRNA_1474 0.47 1.0
389,963 + 9842 mRNA_1474 0.52 -0.0
389,965 - 9842 mRNA_1474 0.52 0.6
390,260 + 9842 mRNA_1474 0.62 -0.5
390,261 - 9842 mRNA_1474 0.62 1.3
390,413 + 9842 mRNA_1474 0.68 2.2
390,454 + 9842 mRNA_1474 0.69 -0.6
390,565 - 9842 mRNA_1474 0.73 -0.6
390,574 - 9842 mRNA_1474 0.73 1.2
391,012 + 9842 mRNA_1474 0.88 0.8
391,137 - 1.2
391,292 + 0.3
391,424 - 1.4
391,445 + -0.1
391,445 - 1.5
391,567 + -1.0
391,588 - -1.4
391,594 + 1.0