Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1473

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840 mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388451 to 391356 9842

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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384,529 + 1.2
384,548 + 0.3
384,653 + 1.7
384,694 + 0.5
384,713 + 0.2
384,724 + -1.2
384,777 + 0.5
384,792 - 0.7
384,814 + -1.4
384,914 + -1.0
384,930 + -0.4
384,931 + -0.1
384,938 + 0.4
384,938 + 0.2
384,968 + 0.2
384,974 - 0.1
384,985 + 0.8
384,988 - 1.6
384,991 - -2.1
384,992 + -1.7
384,996 - -0.3
385,005 - -0.2
385,062 + 0.3
385,063 - -2.7
385,070 - 2.6
385,096 - -0.7
385,098 - -0.1
385,099 + -0.6
385,119 - 0.7
385,119 - -1.4
385,119 + 0.7
385,122 + 0.6
385,131 - -0.0
385,133 + -0.6
385,134 - 1.1
385,153 + 0.6
385,219 - -0.8
385,220 - 0.8
385,261 - -0.8
385,268 + -0.6
385,271 - 1.2
385,304 + -0.9
385,398 - 9841 mRNA_1473 0.11 1.1
385,406 - 9841 mRNA_1473 0.12 -1.3
385,423 - 9841 mRNA_1473 0.12 0.9
385,916 - 9841 mRNA_1473 0.30 0.8
385,990 + 9841 mRNA_1473 0.33 3.2
386,043 + 9841 mRNA_1473 0.35 0.5
386,162 + 9841 mRNA_1473 0.39 0.5
386,318 - 9841 mRNA_1473 0.45 1.2
387,160 - 9841 mRNA_1473 0.75 1.0
387,475 + 9841 mRNA_1473 0.87 1.1
387,634 + 0.3
387,636 + 1.4
387,740 + 0.6
387,910 + 1.9
387,940 + 0.4
388,059 - -0.2
388,062 + 4.8
388,064 - 0.3
388,199 - -1.9
388,205 - -1.1
388,219 - -0.1
388,223 - 0.6
388,229 - 0.3
388,229 + 1.8
388,230 + 0.6
388,235 - 0.1
388,235 + -0.1
388,235 + -0.7
388,238 + -1.2
388,240 + 0.7
388,246 + -1.4
388,251 + 0.1
388,255 - -0.4
388,345 + -0.5
388,365 - -0.7
388,388 + 0.3
388,396 + -1.1
388,502 - 0.7
388,670 - 0.5
388,734 - 0.4
388,795 + 9842 mRNA_1474 0.12 0.2