Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1467

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352655 to 354087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354447 to 358959 9835

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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353,973 - 0.2
353,985 + 0.2
354,103 - 1.4
354,124 - 1.2
354,184 + 0.3
354,210 + 1.6
354,220 - -0.9
354,232 - 0.9
354,241 - -1.3
354,252 + -1.0
354,297 - 0.9
354,339 - -0.4
354,341 + -0.2
354,360 + -0.4
354,365 + 0.6
354,382 + -0.7
354,411 + -1.5
354,424 - -0.6
354,433 - -0.3
354,514 + 0.0
354,540 + -2.5
354,543 + -1.2
354,552 + -2.9
354,592 + -3.0
354,689 - -1.7
354,713 - -1.2
354,720 - -2.5
354,740 + -2.9
354,814 + -0.8
354,859 - 0.1
354,864 + -0.8
355,155 + 9835 mRNA_1467 0.16 -2.6
355,433 + 9835 mRNA_1467 0.22 0.4
356,458 + 9835 mRNA_1467 0.45 -2.3
356,610 - 9835 mRNA_1467 0.48 -3.7
356,707 + 9835 mRNA_1467 0.50 -4.2
357,503 + 9835 mRNA_1467 0.68 -2.7
357,512 + 9835 mRNA_1467 0.68 -2.1
357,633 - 9835 mRNA_1467 0.71 -3.5
357,796 + 9835 mRNA_1467 0.74 -0.9
358,063 - 9835 mRNA_1467 0.80 -2.4
358,096 + 9835 mRNA_1467 0.81 -2.2
358,178 + 9835 mRNA_1467 0.83 -2.6
358,816 + -1.5
358,964 + -2.3
359,128 - -1.4
359,131 + 0.5
359,845 - -1.7