Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1458

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1457: 9825 - K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, at 336305 to 339274 9825 mRNA_1458: 9826 - K17775 MDM34, MMM2 mitochondrial distribution and morphology protein 34, at 339999 to 342727 9826 mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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339,024 + -2.1
339,287 + -4.6
339,288 + -0.9
339,292 - -3.2
339,307 - -1.5
339,425 - -0.8
339,444 - -0.1
339,466 - 0.3
339,471 - -1.0
339,471 - -0.9
339,471 - -0.6
339,473 - -1.0
339,473 - -1.3
339,474 + -1.5
339,477 + -2.3
339,481 + 0.4
339,483 + 0.7
339,485 + 0.7
339,488 - -2.0
339,490 + 0.4
339,494 - -0.8
339,495 + -0.2
339,496 - -0.8
339,594 - 1.6
339,623 + -1.5
339,670 - -1.8
339,672 - 0.2
339,679 + 1.7
339,681 + 0.4
339,777 - -0.6
339,788 - -0.1
339,795 + 0.7
339,808 - 0.6
339,811 - -0.8
339,815 - 0.4
339,822 + -0.9
339,979 + 0.6
341,528 - 9826 mRNA_1458 0.56 1.2
341,567 - 9826 mRNA_1458 0.57 -1.6
341,680 + 9826 mRNA_1458 0.62 -2.1
341,839 + 9826 mRNA_1458 0.67 0.0
341,939 - 9826 mRNA_1458 0.71 -0.4
342,439 + 9826 mRNA_1458 0.89 -0.3
343,440 + 9827 mRNA_1459 0.44 -1.7
343,440 - 9827 mRNA_1459 0.44 -1.0
343,674 + 9827 mRNA_1459 0.63 0.0
343,677 + 9827 mRNA_1459 0.64 -1.2
343,699 - 9827 mRNA_1459 0.65 -0.3