Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1431

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264327 to 265821 9798 mRNA_1431: 9799 - Hypothetical Protein, at 266080 to 266508 9799 mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267491 to 268796 9800

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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265,406 - 9798 mRNA_1430 0.72 -0.5
265,563 - 9798 mRNA_1430 0.83 -1.9
265,684 - -2.5
265,722 - -2.5
265,847 - 2.5
265,876 + 0.6
265,889 - -0.4
265,890 - -1.0
265,894 + -1.0
265,914 + 0.0
266,018 - -0.4
266,036 - -0.5
266,188 + 9799 mRNA_1431 0.25 0.1
266,188 + 9799 mRNA_1431 0.25 -1.2
266,339 - 9799 mRNA_1431 0.60 0.1
266,463 - 9799 mRNA_1431 0.89 0.5
266,464 + 9799 mRNA_1431 0.90 1.0
266,471 - 0.1
266,501 - -1.1
266,506 + -2.1
266,616 + 0.4
266,621 + -0.6
266,634 + -0.9
266,693 - 1.7
266,759 - 0.2
266,760 - 0.4
266,913 - 0.4
266,919 + -0.2
266,927 - -0.9
266,936 - -1.7
267,050 - -0.3
267,052 - -1.1
267,065 + -0.0
267,091 + -0.7
267,091 + -0.0
267,095 + 0.1
267,095 + -1.4
267,103 + 0.6
267,116 + -0.5
267,241 + -0.0
267,251 + -1.0
267,264 + 0.3
267,267 + -0.6
267,274 - 0.1
267,281 + 0.7
267,282 + -0.6
267,388 - -0.2