Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1423

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1422: 9790 - K12236 NFX1 transcriptional repressor NF-X1, at 240937 to 244730 9790 mRNA_1423: 9791 - Hypothetical Protein, at 245191 to 249551 9791 mRNA_1424: 9792 - HMMPfam-NUP50 (Nucleoporin 50 kDa)-PF08911, at 249851 to 250206 9792

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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244,266 - 9790 mRNA_1422 0.88 -2.0
244,267 + 9790 mRNA_1422 0.88 0.6
244,413 + -0.7
244,529 - 1.5
244,607 + -0.5
244,712 - 0.8
244,717 + -0.6
244,842 + -0.6
244,848 - 1.1
244,901 - -0.3
244,957 - 1.3
244,993 - -0.1
245,004 - 0.4
245,011 + 1.5
245,154 - -0.9
245,496 + 0.0
245,685 - 9791 mRNA_1423 0.11 0.1
246,098 - 9791 mRNA_1423 0.21 -1.4
246,438 + 9791 mRNA_1423 0.29 1.0
246,627 + 9791 mRNA_1423 0.33 0.3
247,031 - 9791 mRNA_1423 0.42 0.9
247,862 + 9791 mRNA_1423 0.61 -0.4
248,082 + 9791 mRNA_1423 0.66 0.5
248,168 - 9791 mRNA_1423 0.68 -0.1
248,228 - 9791 mRNA_1423 0.70 -1.1
248,285 + 9791 mRNA_1423 0.71 0.4
248,309 - 9791 mRNA_1423 0.71 0.0
248,465 + 9791 mRNA_1423 0.75 0.3
248,732 + 9791 mRNA_1423 0.81 1.5
249,486 - 0.6
249,502 - 1.5
249,678 + 0.4
249,795 - 0.8
249,795 - -0.6
249,795 - 0.3
249,818 + -1.1
249,850 - 0.5
249,946 - 9792 mRNA_1424 0.27 0.6
250,102 - 9792 mRNA_1424 0.71 -1.2
250,404 - 0.3