Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1369

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1368: 9736 - K03233 EEF1G elongation factor 1-gamma, at 109072 to 110968 9736 mRNA_1369: 9737 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF52833, at 111145 to 112135 9737 mRNA_1370: 9738 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 112389 to 113571 9738

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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110,704 + 9736 mRNA_1368 0.86 0.9
110,709 - 9736 mRNA_1368 0.86 0.2
110,727 - 9736 mRNA_1368 0.87 0.2
110,744 - 9736 mRNA_1368 0.88 0.4
110,865 - 1.3
110,867 - 1.0
110,867 + 0.3
111,008 - -0.1
111,023 + 2.0
111,047 - -0.4
111,048 + -0.4
111,181 - -0.3
111,182 - -0.4
111,195 - -0.4
111,332 + 9737 mRNA_1369 0.19 -1.4
111,344 - 9737 mRNA_1369 0.20 0.3
111,588 + 9737 mRNA_1369 0.45 -3.2
111,749 + 9737 mRNA_1369 0.61 -0.5
111,770 + 9737 mRNA_1369 0.63 0.2
112,070 - 2.6
112,173 + -0.1
112,239 + 0.3
112,666 + 9738 mRNA_1370 0.23 1.5
112,715 - 9738 mRNA_1370 0.28 0.8
112,812 - 9738 mRNA_1370 0.36 -0.1
112,914 - 9738 mRNA_1370 0.44 2.2
112,934 + 9738 mRNA_1370 0.46 1.8
112,949 + 9738 mRNA_1370 0.47 0.8
113,065 + 9738 mRNA_1370 0.57 1.1
113,072 - 9738 mRNA_1370 0.58 -0.3