Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1316

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1315: 9683 - K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, at 903446 to 907323 9683 mRNA_1316: 9684 - KOG4711 Predicted membrane protein, at 907427 to 911419 9684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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907,384 - 0.9
907,585 - -3.0
907,792 + -3.1
907,836 + 9684 mRNA_1316 0.10 -1.6
908,327 - 9684 mRNA_1316 0.23 -1.9
908,382 + 9684 mRNA_1316 0.24 -1.3
908,391 + 9684 mRNA_1316 0.24 -1.7
908,413 + 9684 mRNA_1316 0.25 -1.5
908,534 - 9684 mRNA_1316 0.28 1.1
908,564 + 9684 mRNA_1316 0.28 -4.0
909,497 + 9684 mRNA_1316 0.52 -2.0
909,498 - 9684 mRNA_1316 0.52 -2.7
909,530 - 9684 mRNA_1316 0.53 -3.0
909,559 + 9684 mRNA_1316 0.53 -2.1
909,917 - 9684 mRNA_1316 0.62 -2.2
909,943 - 9684 mRNA_1316 0.63 -0.4
909,999 + 9684 mRNA_1316 0.64 -0.3
910,082 + 9684 mRNA_1316 0.66 -2.4
910,541 + 9684 mRNA_1316 0.78 -2.6
910,564 - 9684 mRNA_1316 0.79 -2.9
910,835 + 9684 mRNA_1316 0.85 -1.0
910,954 - 9684 mRNA_1316 0.88 -2.0
911,155 - -2.3
911,576 + -1.9
911,714 + -2.0
911,718 - 0.1
911,719 + 1.9
911,857 + 0.6
911,868 - -0.9
911,997 + 2.2
912,000 - -0.3
912,000 - 0.3
912,007 + -0.3
912,009 - 2.2
912,010 - -1.2
912,015 - -1.8
912,020 + 0.1
912,022 - 0.6
912,023 + -3.0
912,024 + -0.0
912,027 + -0.7
912,033 - -0.6
912,034 + -0.4
912,039 + -1.4
912,053 + 1.1
912,099 - 0.7
912,103 - -0.1
912,105 - -0.4
912,106 + -0.1
912,109 + -0.6
912,111 + 0.6
912,111 - -0.1
912,113 + -0.2
912,115 - -0.8
912,116 - 0.2
912,117 - -0.4
912,118 - -0.1
912,120 - -0.1
912,121 - -0.7
912,123 + -1.7
912,123 - -0.4
912,123 + -1.6
912,123 + 0.4
912,124 - -0.4
912,124 - -0.1
912,125 - -0.4
912,125 - 0.2
912,125 - 0.8
912,125 + -0.0
912,126 + -1.4
912,129 - -0.3
912,129 - 1.1
912,129 - 2.2
912,133 + 0.3
912,136 + 0.0
912,138 - -1.6
912,139 - -0.1
912,140 - 0.7
912,145 - -0.5
912,154 + 1.4
912,161 - 0.9
912,167 + -0.2
912,168 - -0.6
912,175 + -0.8
912,304 + -0.4
912,401 + -0.4