Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1299

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859180 to 859998 9666 mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860509 to 862713 9667 mRNA_1300: 9668 - BLAST polynucleotide 5-hydroxyl-kinase grc3 [Xanthophyllomy..., at 862697 to 864122 9668

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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859,568 - 9666 mRNA_1298 0.47 -0.3
859,600 - 9666 mRNA_1298 0.51 -0.4
859,615 + 9666 mRNA_1298 0.53 0.3
859,761 - 9666 mRNA_1298 0.71 -1.7
859,763 + 9666 mRNA_1298 0.71 -1.4
859,764 - 9666 mRNA_1298 0.71 -0.7
859,769 + 9666 mRNA_1298 0.72 0.3
859,769 - 9666 mRNA_1298 0.72 0.2
859,779 + 9666 mRNA_1298 0.73 -1.2
859,784 - 9666 mRNA_1298 0.74 -1.7
859,794 + 9666 mRNA_1298 0.75 0.7
859,804 + 9666 mRNA_1298 0.76 -0.5
859,821 + 9666 mRNA_1298 0.78 -2.1
859,845 + 9666 mRNA_1298 0.81 0.6
859,846 - 9666 mRNA_1298 0.81 0.8
859,851 - 9666 mRNA_1298 0.82 -1.4
859,854 - 9666 mRNA_1298 0.82 -1.9
859,856 + 9666 mRNA_1298 0.83 1.1
859,857 - 9666 mRNA_1298 0.83 0.6
859,860 + 9666 mRNA_1298 0.83 0.8
859,862 + 9666 mRNA_1298 0.83 -0.2
859,865 - 9666 mRNA_1298 0.84 2.6
859,867 + 9666 mRNA_1298 0.84 0.7
859,870 - 9666 mRNA_1298 0.84 -1.6
859,872 + 9666 mRNA_1298 0.84 2.6
859,872 + 9666 mRNA_1298 0.84 -0.5
859,882 + 9666 mRNA_1298 0.86 0.8
859,892 - 9666 mRNA_1298 0.87 -1.4
859,912 + 9666 mRNA_1298 0.89 2.4
859,916 + 9666 mRNA_1298 0.90 1.0
859,925 - -0.7
859,974 + 0.4
859,994 - -0.5
860,062 - -1.3
860,074 + -0.0
860,097 - 0.6
860,136 + -1.2
860,145 - -0.5
860,204 - -0.0
860,228 - -0.2
860,237 - 0.7
860,264 - -0.9
860,270 + -0.6
860,279 - -0.5
860,279 + 1.0
860,290 + 0.1
860,300 - 0.3
860,395 + 0.1
860,407 + -1.9
860,415 - 0.6
862,352 + 9667 mRNA_1299 0.84 -1.9
862,677 - 0.9
862,783 - -0.8
862,789 - -1.1
862,790 + 0.2
862,792 + 0.6
862,792 - 0.3
862,794 - -1.0
862,805 + 0.9
862,807 + 1.3
862,811 + 0.2
862,811 + -0.1
862,813 - -0.3
862,814 - 0.9
862,814 - 1.3
862,816 + -1.0
862,820 - -0.2
862,821 + 1.1
862,823 + 2.1
862,827 - 0.7
862,830 + -2.5
862,840 - 9668 mRNA_1300 0.10 -0.8
862,848 - 9668 mRNA_1300 0.11 -1.5
862,851 - 9668 mRNA_1300 0.11 -0.9
863,321 + 9668 mRNA_1300 0.44 2.2