Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1293

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661 mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852831 to 853984 9662

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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849,896 - 9660 mRNA_1292 0.87 -2.0
850,122 - -0.2
850,141 - 2.2
850,148 + 0.2
850,290 - -0.1
850,299 + -0.7
850,307 + 0.6
850,325 - -0.7
850,344 + 4.2
850,420 + -0.8
850,487 + -0.5
850,546 - 1.2
850,602 - 0.4
850,740 - 0.9
850,743 - -0.2
850,744 - -0.5
850,884 + 0.6
850,936 + 0.2
851,035 + 9661 mRNA_1293 0.15 -0.8
851,206 - 9661 mRNA_1293 0.30 -0.0
851,531 + 9661 mRNA_1293 0.59 1.3
851,656 + 9661 mRNA_1293 0.70 0.9
851,730 + 9661 mRNA_1293 0.76 0.7
851,768 - 9661 mRNA_1293 0.80 -0.9
851,859 - 9661 mRNA_1293 0.88 0.5
851,863 - 9661 mRNA_1293 0.88 -1.3
851,882 - 9661 mRNA_1293 0.90 0.2
851,891 - -0.3
851,897 + 1.6
851,900 + 0.4
851,906 - 0.2
851,914 - 0.8
851,917 + -0.6
852,137 - 0.5
852,277 - -1.2
852,338 - -1.0
852,343 + 0.6
852,353 + -1.8
852,356 + -0.6
852,359 + 0.7
852,362 + -0.1
852,372 + -0.4
852,490 - 0.1
852,492 + 0.6
852,501 - 1.5
852,510 - -0.6
852,637 - 1.6
852,925 - 0.2