Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1284

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1283: 9651 - K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e, at 830551 to 831805 9651 mRNA_1284: 9652 - K12897 TRA2 transformer-2 protein, at 832225 to 833165 9652 mRNA_1285: 9653 - Interpro Ribosomal protein 60S L18 and 50S L18e 0, at 833879 to 834376 9653

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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831,489 - 9651 mRNA_1283 0.75 0.5
832,005 - -0.4
832,006 + -0.2
832,008 + 0.2
832,008 + -0.9
832,012 + 0.2
832,014 + 0.9
832,014 + -1.3
832,014 + 1.6
832,019 + 0.8
832,025 + 0.3
832,037 - 0.0
832,043 - 0.3
832,057 + -1.0
832,161 + -0.9
832,165 + 0.2
832,168 - -1.0
832,168 - -1.3
832,174 - -1.6
832,178 + 0.7
832,194 + -0.1
832,194 + 0.5
832,197 - -1.8
832,234 + -0.2
832,321 - 9652 mRNA_1284 0.10 0.1
832,335 + 9652 mRNA_1284 0.12 0.4
832,336 - 9652 mRNA_1284 0.12 0.7
832,340 + 9652 mRNA_1284 0.12 -1.0
832,356 + 9652 mRNA_1284 0.14 -0.2
832,472 - 9652 mRNA_1284 0.26 -0.3
832,781 + 9652 mRNA_1284 0.59 1.1
832,790 - 9652 mRNA_1284 0.60 -1.0
833,218 + 2.0
833,511 + -1.9
833,771 + 1.0
833,803 - 2.1
833,936 - 9653 mRNA_1285 0.11 -0.1
833,994 - 9653 mRNA_1285 0.23 0.0