Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1278

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817751 to 818897 9645 mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819504 to 821830 9646 mRNA_1279: 9647 - BLAST family 16 carbohydrate esterase [Melampsora laric..., at 822626 to 824265 9647

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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818,512 + 9645 mRNA_1277 0.66 0.8
818,527 - 9645 mRNA_1277 0.68 -1.5
818,533 + 9645 mRNA_1277 0.68 -0.4
818,536 + 9645 mRNA_1277 0.68 -2.9
818,789 - 0.6
818,940 + -0.2
818,998 - 0.2
819,004 + -0.2
819,103 + 0.2
819,180 + 1.4
819,274 - -1.0
819,447 - 0.2
819,829 - 9646 mRNA_1278 0.14 1.1
819,837 + 9646 mRNA_1278 0.14 1.2
820,078 - 9646 mRNA_1278 0.25 -0.1
820,460 - 9646 mRNA_1278 0.41 -2.2
820,460 - 9646 mRNA_1278 0.41 -1.7
821,163 - 9646 mRNA_1278 0.71 0.9
821,247 - 9646 mRNA_1278 0.75 -0.3
821,288 - 9646 mRNA_1278 0.77 1.9
821,288 + 9646 mRNA_1278 0.77 1.8
821,415 - 9646 mRNA_1278 0.82 1.2
821,428 + 9646 mRNA_1278 0.83 -0.0
821,550 - 9646 mRNA_1278 0.88 -0.5
821,561 + 9646 mRNA_1278 0.88 0.9
821,569 - 9646 mRNA_1278 0.89 -0.2
821,578 - 9646 mRNA_1278 0.89 -1.1
821,578 + 9646 mRNA_1278 0.89 -0.8
821,589 - 9646 mRNA_1278 0.90 -0.4
821,706 - 0.6
821,717 - -0.6
821,730 + -0.7
821,744 + 0.7
821,748 + 0.9
821,752 - 0.7
821,755 + 0.8
821,764 + 0.5
821,835 + 1.5
821,887 + -0.2
821,911 + 0.7
821,919 + 0.4
821,919 + 0.4
821,921 + -0.6
821,922 - -0.9
821,923 - -0.1
821,923 + -0.1
821,924 + -1.8
821,927 + 0.4
821,928 + 0.6
821,929 - -0.6
821,931 + 0.5
821,939 - -2.3
821,940 - -1.9
821,941 - 0.1
821,941 + -1.6
821,965 + -0.2
821,970 - -0.2
821,975 - 0.7
821,983 - 0.3
821,996 - -1.3
822,000 - 0.9
822,004 - 1.6
822,005 - 0.4
822,091 - -0.2
822,179 - -1.4
822,180 + 0.3
822,189 - -1.2
822,208 - 1.4
822,214 - 0.6
822,214 - -0.2
822,231 - -0.0
822,235 - -0.5
822,242 + 2.8
822,242 + -2.1
822,249 + -0.5
822,250 + 0.2
822,257 - 1.0
822,259 + 1.4
822,262 + 0.7
822,266 - -1.4
822,375 + 0.3
822,377 + 1.9