Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1272

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575 9640 mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808747 to 810374 9641

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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806,674 + -0.1
806,676 - 0.3
806,830 + 0.6
807,271 + 0.0
807,273 - -0.3
807,294 - 0.3
807,296 - 0.0
807,300 + 2.3
807,300 + -0.5
807,388 + -0.4
807,399 + -0.2
807,412 - 1.2
807,425 + 1.2
807,545 - 0.8
807,663 + 0.7
807,706 - -0.4
807,714 - -1.2
807,864 + 9640 mRNA_1272 0.24 1.2
807,870 + 9640 mRNA_1272 0.24 0.9
807,997 + 9640 mRNA_1272 0.38 -0.0
808,140 - 9640 mRNA_1272 0.53 1.2
808,400 - 9640 mRNA_1272 0.81 -0.7
808,400 - 9640 mRNA_1272 0.81 1.2
808,476 - 9640 mRNA_1272 0.89 -2.6
808,566 - -0.6
808,910 + 9641 mRNA_1273 0.10 0.3
809,289 - 9641 mRNA_1273 0.33 -0.8
809,369 + 9641 mRNA_1273 0.38 -0.1
809,488 - 9641 mRNA_1273 0.46 -0.7
809,571 - 9641 mRNA_1273 0.51 -0.4