Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1260

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771743 to 774831 9627 mRNA_1260: 9628 - Hypothetical Protein, at 775033 to 777519 9628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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774,079 + 9627 mRNA_1259 0.76 -0.1
774,179 - 9627 mRNA_1259 0.79 0.8
774,187 + 9627 mRNA_1259 0.79 -0.2
774,187 + 9627 mRNA_1259 0.79 1.3
774,313 - 9627 mRNA_1259 0.83 1.2
774,322 + 9627 mRNA_1259 0.83 0.5
774,342 + 9627 mRNA_1259 0.84 1.6
774,450 + 9627 mRNA_1259 0.88 1.4
774,680 - 1.0
775,001 + 1.1
775,061 - 0.7
775,290 + 9628 mRNA_1260 0.10 1.5
775,449 + 9628 mRNA_1260 0.17 1.2
775,509 + 9628 mRNA_1260 0.19 1.2
775,660 - 9628 mRNA_1260 0.25 0.5
775,701 + 9628 mRNA_1260 0.27 0.8
775,730 + 9628 mRNA_1260 0.28 0.9
775,845 - 9628 mRNA_1260 0.33 0.8
775,958 + 9628 mRNA_1260 0.37 1.1
775,981 + 9628 mRNA_1260 0.38 2.1
776,404 + 9628 mRNA_1260 0.55 1.7
776,407 - 9628 mRNA_1260 0.55 0.3
776,508 - 9628 mRNA_1260 0.59 0.9
776,578 + 9628 mRNA_1260 0.62 1.4
776,580 - 9628 mRNA_1260 0.62 0.9
776,689 - 9628 mRNA_1260 0.67 -0.4
776,690 - 9628 mRNA_1260 0.67 0.8
776,697 - 9628 mRNA_1260 0.67 1.1
776,701 - 9628 mRNA_1260 0.67 1.2
776,849 + 9628 mRNA_1260 0.73 0.7
776,902 + 9628 mRNA_1260 0.75 0.7
776,992 - 9628 mRNA_1260 0.79 1.0
776,993 + 9628 mRNA_1260 0.79 0.7
777,160 + 9628 mRNA_1260 0.86 0.8
777,251 - 9628 mRNA_1260 0.89 2.1
777,269 + 9628 mRNA_1260 0.90 1.2
777,280 - 0.3
777,288 + 0.8
777,567 - 0.6
777,584 - 1.3
778,515 - 2.1