Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1238

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724433 to 725551 9605 mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726176 to 728961 9606 mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729414 to 732263 9607

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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725,492 + -0.8
725,698 - -0.7
725,715 + 0.5
725,715 - -0.7
725,750 - -0.5
725,752 - -0.3
725,753 - -0.2
725,771 + 1.0
725,877 + -0.9
726,057 + -0.4
726,077 - -0.1
726,206 - -0.1
726,208 - -0.3
726,218 - 0.4
726,345 - 2.0
726,386 + -0.9
726,406 - -1.2
726,859 - 9606 mRNA_1238 0.25 -1.1
726,936 - 9606 mRNA_1238 0.27 0.0
726,939 + 9606 mRNA_1238 0.27 -1.3
727,084 - 9606 mRNA_1238 0.33 0.2
727,183 - 9606 mRNA_1238 0.36 0.2
727,214 + 9606 mRNA_1238 0.37 0.3
727,237 + 9606 mRNA_1238 0.38 0.1
727,320 - 9606 mRNA_1238 0.41 0.1
727,322 + 9606 mRNA_1238 0.41 0.5
727,517 + 9606 mRNA_1238 0.48 0.4
727,634 + 9606 mRNA_1238 0.52 -0.2
727,778 + 9606 mRNA_1238 0.58 -0.6
727,942 + 9606 mRNA_1238 0.63 -0.7
728,378 + 9606 mRNA_1238 0.79 0.6
728,517 + 9606 mRNA_1238 0.84 1.1
728,618 - 9606 mRNA_1238 0.88 0.3
728,645 - 9606 mRNA_1238 0.89 -1.6
728,645 + 9606 mRNA_1238 0.89 -0.5
728,807 + 0.4
729,355 - 0.2
729,365 - -0.6
729,370 - -0.1
729,387 + 0.9
729,815 - 9607 mRNA_1239 0.14 1.1
729,819 - 9607 mRNA_1239 0.14 0.4
729,832 + 9607 mRNA_1239 0.15 2.0