Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1228

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699587 to 703104 9596 mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703452 to 704884 9597

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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699,044 - -0.4
699,135 + -1.3
699,138 + 2.2
699,169 + 1.4
699,250 - 0.1
699,253 - 0.7
699,262 + -2.0
699,263 + 1.0
699,263 - -0.8
699,278 + 0.9
699,326 - 1.1
699,346 + 0.7
699,356 - 0.8
699,358 - 0.1
699,368 - 2.0
699,377 + 0.5
699,379 + 0.9
699,389 - 0.5
699,409 - 0.9
699,409 + 0.5
699,423 - 1.0
699,423 - 2.2
699,425 - 0.3
699,432 - -0.6
699,449 - 0.6
699,473 + 0.4
699,475 + 2.2
699,476 - 1.3
699,487 + 0.7
699,487 - -0.3
699,502 + -0.3
699,504 + -0.5
699,519 - -0.0
699,520 - 0.7
699,531 - 2.4
699,533 - 1.1
699,534 + 0.1
699,669 + -1.3
699,671 + -3.5
699,677 + -3.3
699,684 + 1.1
699,691 + -1.0
699,698 + -0.4
699,828 + -3.9
699,831 - 0.7
699,831 - -3.3
699,834 - -1.6
700,568 + 9596 mRNA_1228 0.28 -1.7
700,722 - 9596 mRNA_1228 0.32 0.1
701,166 + 9596 mRNA_1228 0.45 -1.9
701,288 - 9596 mRNA_1228 0.48 -3.1
701,323 - 9596 mRNA_1228 0.49 -2.4
701,829 - 9596 mRNA_1228 0.64 -3.2
702,187 - 9596 mRNA_1228 0.74 -4.1
702,191 + 9596 mRNA_1228 0.74 -0.6
702,200 - 9596 mRNA_1228 0.74 -0.4
702,207 - 9596 mRNA_1228 0.74 -4.0
702,209 + 9596 mRNA_1228 0.75 -3.7
702,763 - -1.4
702,787 + -4.8
703,072 - -1.8
703,125 - 1.5
703,323 + 2.0
703,326 - 1.7
703,650 - 9597 mRNA_1229 0.14 -0.1
704,070 + 9597 mRNA_1229 0.43 -0.6