Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1223

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591 mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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686,610 - 0.6
686,681 - -0.2
686,734 + 0.4
686,767 + 1.0
686,790 + -0.0
686,826 - -0.3
686,843 - 2.0
686,880 - -0.5
686,885 - 0.0
686,887 - 0.1
686,889 + -0.1
686,900 + 0.6
686,917 + -2.2
686,923 + 0.4
686,954 + -1.3
686,964 - 1.3
686,988 - 2.0
686,988 - -1.1
687,015 - -0.2
687,018 + 0.2
687,029 + 1.1
687,033 + 1.2
687,043 - -0.3
687,046 + 2.3
687,052 + 0.1
687,061 + -0.0
687,064 - -0.3
687,186 - -0.2
687,192 - 2.9
687,214 + -0.5
687,363 + -0.7
687,497 + 0.3
687,639 + 9591 mRNA_1223 0.10 -2.1
687,767 + 9591 mRNA_1223 0.15 -0.9
688,125 + 9591 mRNA_1223 0.30 2.0
688,156 - 9591 mRNA_1223 0.31 -0.8
688,341 + 9591 mRNA_1223 0.38 0.2
688,501 + 9591 mRNA_1223 0.45 -0.3
688,908 - 9591 mRNA_1223 0.61 -1.7
689,086 + 9591 mRNA_1223 0.68 -1.8
689,807 + 1.5
689,863 - 0.2
689,959 + 1.6
689,968 + -0.4
689,968 - 0.8
689,972 + 0.7
690,032 + 0.1
690,045 + 1.7
690,189 + 0.1
690,304 + 9592 mRNA_1224 0.18 0.1
690,320 + 9592 mRNA_1224 0.19 -1.1
690,324 + 9592 mRNA_1224 0.19 0.9
690,457 + 9592 mRNA_1224 0.30 -0.2
690,466 - 9592 mRNA_1224 0.31 -2.0
690,594 - 9592 mRNA_1224 0.42 0.4
690,760 - 9592 mRNA_1224 0.55 1.2