Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1222

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679841 to 682126 9589 mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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682,145 + -0.0
682,446 + 0.5
682,646 + -0.4
682,646 - 0.3
683,192 + 9590 mRNA_1222 0.19 1.5
683,418 + 9590 mRNA_1222 0.24 -0.1
683,461 - 9590 mRNA_1222 0.25 0.6
683,470 - 9590 mRNA_1222 0.26 -0.1
683,563 - 9590 mRNA_1222 0.28 -0.2
683,586 - 9590 mRNA_1222 0.29 -0.0
683,599 + 9590 mRNA_1222 0.29 1.4
683,719 - 9590 mRNA_1222 0.32 -0.3
683,891 - 9590 mRNA_1222 0.36 0.5
683,992 + 9590 mRNA_1222 0.38 0.9
684,002 - 9590 mRNA_1222 0.39 0.0
684,713 + 9590 mRNA_1222 0.56 1.2
684,819 - 9590 mRNA_1222 0.59 0.7
685,003 + 9590 mRNA_1222 0.63 -0.4
685,052 - 9590 mRNA_1222 0.64 -0.0
685,272 + 9590 mRNA_1222 0.70 2.0
685,604 + 9590 mRNA_1222 0.78 -1.6
685,708 + 9590 mRNA_1222 0.80 0.7
685,864 + 9590 mRNA_1222 0.84 2.3
685,905 - 9590 mRNA_1222 0.85 0.2
686,167 + 0.4
686,169 - -0.7
686,211 - 0.1
686,294 - 2.5
686,610 - 0.6
686,681 - -0.2
686,734 + 0.4
686,767 + 1.0
686,790 + -0.0
686,826 - -0.3
686,843 - 2.0
686,880 - -0.5
686,885 - 0.0
686,887 - 0.1
686,889 + -0.1
686,900 + 0.6
686,917 + -2.2
686,923 + 0.4
686,954 + -1.3
686,964 - 1.3
686,988 - 2.0
686,988 - -1.1
687,015 - -0.2
687,018 + 0.2
687,029 + 1.1
687,033 + 1.2
687,043 - -0.3
687,046 + 2.3
687,052 + 0.1
687,061 + -0.0
687,064 - -0.3
687,186 - -0.2
687,192 - 2.9
687,214 + -0.5
687,363 + -0.7
687,497 + 0.3