Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1205

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1204: 9572 - K11253 H3 histone H3, at 644516 to 645336 9572 mRNA_1205: 9573 - Hypothetical Protein, at 645858 to 646499 9573 mRNA_1206: 9574 - K00021 HMGCR hydroxymethylglutaryl-CoA reductase (NADPH), at 646745 to 651192 9574

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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644,878 - 9572 mRNA_1204 0.44 0.9
644,901 + 9572 mRNA_1204 0.47 -0.1
645,188 - 9572 mRNA_1204 0.82 -0.5
645,466 + 0.1
645,486 + -0.9
645,597 - 0.4
645,601 - -3.3
645,608 + 0.4
645,614 + 0.5
645,615 - -0.9
645,667 + 0.4
645,667 - -1.2
645,677 - 0.2
645,693 - 1.4
645,706 - -0.8
645,707 + -0.3
645,707 + 0.1
645,710 - 0.8
645,717 + -0.6
645,717 - -0.0
645,719 - -0.4
645,747 + -0.1
645,751 - -0.1
645,763 - -0.2
645,846 + 1.4
645,862 - -0.3
645,870 - -0.9
646,165 - 9573 mRNA_1205 0.48 1.3
646,195 - 9573 mRNA_1205 0.52 0.3
646,329 - 9573 mRNA_1205 0.73 -2.8
646,356 - 9573 mRNA_1205 0.78 1.4
646,358 + 9573 mRNA_1205 0.78 -0.6
646,370 - 9573 mRNA_1205 0.80 0.1
646,375 - 9573 mRNA_1205 0.81 0.4
646,480 - -0.3
646,494 - 2.7
646,494 - -0.1
646,502 + 1.5
646,503 - -0.8
646,504 + 0.3
646,505 - 0.2
646,514 + 0.2
646,518 - -1.9
646,526 + 0.2
646,610 + 0.3
646,660 - -0.6