Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1193

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616392 to 618414 9560 mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618729 to 620711 9561 mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621153 to 623607 9562

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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617,921 - 9560 mRNA_1192 0.76 -2.4
617,953 + 9560 mRNA_1192 0.77 0.6
618,052 + 9560 mRNA_1192 0.82 0.8
618,052 - 9560 mRNA_1192 0.82 0.1
618,192 - 9560 mRNA_1192 0.89 2.5
618,229 - 0.3
618,229 + 0.0
618,244 + 1.3
618,371 + 1.4
618,381 + 0.1
618,405 + -0.3
618,416 - -0.4
618,417 + -0.3
618,418 + -0.7
618,418 + 0.3
618,418 + 1.9
618,418 + 1.5
618,418 + -0.3
618,419 + -0.7
618,419 + -1.9
618,425 + 1.9
618,530 + 0.0
618,536 + 1.4
618,576 + -0.6
618,627 - 1.7
618,638 - -2.1
618,641 - 0.7
618,667 + 0.8
618,681 - 1.8
618,710 + 0.1
618,713 - -0.3
618,773 + 0.9
618,931 - 9561 mRNA_1193 0.10 0.7
619,053 + 9561 mRNA_1193 0.16 0.7
619,270 + 9561 mRNA_1193 0.27 -2.7
619,427 - 9561 mRNA_1193 0.35 -0.5
619,428 - 9561 mRNA_1193 0.35 -0.4
619,663 - 9561 mRNA_1193 0.47 -0.3
619,993 - 9561 mRNA_1193 0.64 -0.1
620,167 - 9561 mRNA_1193 0.73 -0.8
620,190 + 9561 mRNA_1193 0.74 -0.9
620,190 + 9561 mRNA_1193 0.74 1.2
620,191 - 9561 mRNA_1193 0.74 -0.8
620,254 - 9561 mRNA_1193 0.77 2.5
620,450 - 9561 mRNA_1193 0.87 3.7
620,542 + 1.5
620,584 - 0.3
620,724 - -0.3
620,875 + 1.0
620,885 + 0.7
621,036 + 0.4
621,055 - 0.4
621,057 + 0.6
621,163 - -1.6
621,192 + -0.1
621,305 + -0.3
621,397 + -3.2
621,398 + 1.5
621,695 - 9562 mRNA_1194 0.22 0.8